Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.3e-263 912.5 465 100.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 4.7e-197 691.4 457 77.2
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 8.0e-189 664.1 456 75.2
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.0e-187 659.4 456 74.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 2.6e-187 659.1 453 74.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 5.9e-184 647.9 454 72.7
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 6.1e-181 637.9 457 70.7
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 2.0e-179 632.9 452 73.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 7.5e-179 630.9 520 65.0
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.1e-177 627.1 453 70.6
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.7e-175 619.8 451 69.4
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 3.0e-175 619.0 484 67.6
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 3.3e-174 615.5 482 68.5
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.3e-174 615.1 450 69.3
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 9.5e-174 614.0 454 69.4
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 3.6e-173 612.1 453 68.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 4.7e-173 611.7 453 68.7
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 6.2e-173 611.3 453 68.9
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.4e-172 610.1 455 69.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-172 610.1 458 67.9
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 4.4e-171 605.1 443 70.4
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.3e-170 603.6 473 68.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 2.9e-170 602.4 454 68.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 4.9e-170 601.7 422 72.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 8.3e-170 600.9 453 68.4
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.1e-169 600.5 445 70.6
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.2e-168 597.0 451 67.6
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.7e-167 593.2 456 67.1
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.7e-167 593.2 443 68.4
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.7e-167 593.2 468 66.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 3.0e-167 592.4 449 69.5
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 5.1e-167 591.7 454 67.2
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 6.6e-167 591.3 444 68.9
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.5e-166 589.3 489 64.0
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 9.5e-166 587.4 496 61.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 9.5e-166 587.4 467 64.9
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.2e-165 587.0 455 67.3
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.1e-165 586.3 456 66.4
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 3.6e-165 585.5 449 66.4
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 1.1e-164 583.9 467 64.7
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.1e-164 583.9 467 64.7
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 6.8e-164 581.3 444 68.0
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 8.9e-164 580.9 460 64.6
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 3.4e-163 578.9 455 67.0
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 7.6e-163 577.8 463 65.0
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.3e-162 577.0 453 65.1
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.3e-162 577.0 451 67.8
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 2.9e-162 575.9 454 64.5
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 6.4e-162 574.7 453 64.9
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 2.4e-161 572.8 460 65.0
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.1e-160 569.7 454 65.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 2.1e-160 569.7 445 66.1
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 2.7e-160 569.3 453 64.5
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 6.0e-160 568.2 458 64.6
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.7e-159 566.6 448 65.4
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.7e-159 566.6 464 65.1
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 5.1e-159 565.1 463 64.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.5e-158 563.5 471 64.1
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.5e-158 563.5 467 63.6
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 9.6e-158 560.8 454 63.0
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.2e-157 558.1 466 64.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.1e-156 557.4 470 63.0
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.4e-156 557.0 471 63.7
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.8e-156 556.6 453 63.1
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-156 556.6 471 62.0
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 6.8e-156 554.7 442 65.6
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.5e-155 553.5 454 61.9
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 2.0e-155 553.1 455 61.8
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 4.4e-155 552.0 454 61.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 4.4e-155 552.0 464 61.2
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 9.9e-155 550.8 444 61.9
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.3e-154 550.4 454 60.8
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.4e-153 547.0 444 61.7
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 5.4e-153 545.0 462 60.4
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 5.4e-153 545.0 455 60.9
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 7.1e-153 544.7 453 63.4
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.6e-152 543.5 467 61.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 7.8e-152 541.2 456 60.7
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.3e-151 540.4 456 62.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.3e-151 540.4 422 67.5
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.5e-150 537.0 452 61.9
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.5e-150 536.2 423 66.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.6e-149 533.5 463 59.4
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 2.8e-149 532.7 443 61.6
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 2.8e-149 532.7 443 61.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 6.2e-149 531.6 441 60.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 2.4e-148 529.6 451 64.5
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 4.4e-147 525.4 433 64.0
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-146 523.9 464 59.3
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.7e-146 523.5 441 60.5
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.1e-145 520.8 476 59.2
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.4e-145 520.4 449 61.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.6e-144 516.9 457 58.2
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 6.0e-144 515.0 520 53.7
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.3e-143 513.8 402 66.7
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 4.3e-142 508.8 454 59.0
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 7.3e-142 508.1 465 57.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.1e-140 504.2 436 62.2
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.3e-138 497.3 426 63.4
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.2e-138 496.5 482 56.2
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 6.4e-138 495.0 448 59.4
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.4e-137 493.0 484 56.2
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 4.2e-137 492.3 449 59.2
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.1e-136 490.0 480 55.6
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 4.6e-128 462.2 352 68.8
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.8e-124 450.3 458 55.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.7e-120 436.4 381 59.8
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 6.7e-111 405.2 458 48.0
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 8.2e-109 398.3 370 60.5
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.8e-108 397.1 306 67.0
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.6e-104 384.0 299 66.6
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 4.4e-102 375.9 508 43.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 7.4e-102 375.2 376 56.6
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.4e-100 370.2 523 41.1
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.8e-93 345.9 354 55.9
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 7.0e-92 342.0 474 42.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 6.8e-79 298.9 614 34.7
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.2e-78 298.1 525 39.4
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.1e-55 221.9 454 34.1
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.8e-55 221.1 453 32.9
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 4.9e-53 213.0 494 32.8
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 5.1e-50 203.0 161 64.6
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 7.6e-46 189.1 250 43.2
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 8.6e-42 175.6 249 45.0
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.0e-34 152.1 225 42.7
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.6e-30 136.0 109 58.7
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.2e-28 130.6 191 47.6
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 4.2e-28 130.2 191 47.6
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.5e-22 111.7 168 41.7
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 9.9e-22 109.0 90 63.3
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 7.9e-19 99.4 75 56.0
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 6.7e-18 96.3 146 43.2
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 5.6e-17 93.2 67 64.2
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 2.1e-16 91.3 109 48.6
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.8e-16 90.1 235 29.8
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.0e-13 82.4 111 45.9
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.0e-13 82.4 134 44.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 7.9e-11 72.8 63 54.0
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 1.1e-09 68.9 93 45.2
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.5e-09 68.6 141 34.0
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 2.5e-09 67.8 93 45.2
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.8e-08 64.3 35 80.0
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 6.3e-08 63.2 67 53.7
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.1e-07 62.4 34 82.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 2.0e-06 58.2 77 49.4
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 2.6e-06 57.8 49 55.1


User provided reference genes

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