Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 0.0e+00 1288.9 659 100.0
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 6.0e-291 1003.8 655 77.7
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.6e-278 961.8 655 74.5
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.5e-278 961.1 651 75.4
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.2e-276 954.9 653 74.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.9e-274 948.0 654 74.3
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.0e-269 933.3 650 73.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.9e-268 929.1 650 72.9
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.2e-267 926.4 655 72.1
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 4.7e-267 924.5 648 73.3
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.0e-266 921.8 646 72.9
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 6.7e-266 920.6 662 71.0
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 8.8e-266 920.2 650 72.5
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.5e-265 919.5 651 70.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.0e-265 919.1 655 71.3
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.7e-265 917.5 646 72.3
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 3.7e-264 914.8 645 72.6
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 8.2e-264 913.7 653 71.4
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.4e-263 912.9 661 70.3
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-263 912.1 649 71.6
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 2.4e-263 912.1 649 72.0
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 2.9e-261 905.2 660 69.1
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 3.8e-261 904.8 660 69.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 5.0e-261 904.4 692 67.3
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.5e-260 902.9 662 69.9
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 5.5e-260 901.0 654 70.6
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.2e-259 899.8 653 70.3
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.6e-259 899.4 653 70.1
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-258 896.3 654 69.6
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.5e-257 892.9 653 68.6
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 4.4e-257 891.3 668 68.1
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.3e-256 889.8 656 68.8
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.1e-255 886.7 692 67.8
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 3.1e-255 885.2 647 69.9
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.0e-253 880.2 653 67.7
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 4.2e-252 874.8 662 67.2
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 7.2e-252 874.0 695 65.6
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.2e-251 873.2 648 69.9
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 2.7e-251 872.1 654 67.1
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.0e-250 870.2 653 67.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.8e-250 869.4 730 63.3
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 8.8e-250 867.1 662 65.1
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 3.4e-249 865.1 651 68.8
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 2.2e-248 862.4 662 65.3
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.1e-247 858.6 657 66.2
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 2.7e-246 855.5 647 67.5
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.0e-245 853.6 656 66.0
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.9e-245 852.0 654 65.4
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 3.8e-245 851.7 654 65.1
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.8e-245 851.7 653 66.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 5.0e-245 851.3 735 61.8
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.9e-244 849.4 685 63.5
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.2e-243 846.7 656 65.5
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.6e-243 846.3 623 68.1
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 2.1e-243 845.9 647 66.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.4e-242 843.2 624 68.9
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 6.8e-242 840.9 660 64.4
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.5e-241 839.7 660 64.5
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 4.4e-241 838.2 665 64.4
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.8e-240 835.5 584 73.5
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 3.7e-240 835.1 647 65.8
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 4.9e-240 834.7 654 65.1
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.1e-239 833.6 654 64.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.1e-239 833.6 652 65.0
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.4e-239 833.2 651 65.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.8e-239 832.8 654 67.4
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.4e-239 832.4 634 68.0
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 3.1e-239 832.0 648 65.0
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 5.4e-239 831.2 654 65.1
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 7.8e-238 827.4 645 66.4
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 5.6e-236 821.2 653 63.7
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.6e-235 819.7 648 63.9
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 6.1e-235 817.8 652 64.0
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.8e-234 816.2 638 63.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 2.9e-232 808.9 703 60.2
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 4.1e-231 805.1 652 63.0
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.1e-228 797.0 578 70.9
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 1.5e-228 796.6 675 60.6
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 3.3e-228 795.4 576 71.0
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 8.0e-227 790.8 642 63.9
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-226 790.0 669 63.2
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 8.9e-226 787.3 689 61.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 2.6e-225 785.8 722 57.6
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.4e-223 780.0 647 63.2
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.6e-221 771.2 646 61.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 3.6e-219 765.4 560 69.1
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 4.0e-218 761.9 662 59.1
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 5.8e-217 758.1 686 58.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 2.2e-216 756.1 702 58.3
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.9e-216 755.0 652 60.1
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 2.7e-214 749.2 660 58.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 8.9e-210 734.2 569 65.6
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.2e-209 733.8 514 73.0
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.9e-209 730.7 651 60.4
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.4e-201 705.3 652 57.2
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.1e-199 700.7 651 57.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.5e-188 662.9 623 57.3
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.2e-183 645.6 494 67.2
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.9e-181 639.0 597 57.1
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.9e-167 593.6 650 49.1
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 8.2e-163 578.2 671 48.0
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.2e-151 539.3 707 50.5
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 9.1e-146 521.5 352 74.4
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 5.7e-140 502.3 682 43.3
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.7e-120 437.6 561 45.8
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 3.3e-119 433.3 320 69.4
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.1e-90 338.6 355 54.1
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 8.7e-88 328.9 299 55.5
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 7.6e-76 289.3 649 32.5
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.3e-71 273.9 240 60.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.1e-70 271.2 335 46.9
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 7.4e-47 193.0 307 35.5
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.8e-45 188.3 168 54.8
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.7e-43 181.8 311 37.6
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 2.6e-36 157.9 623 26.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.6e-33 148.7 134 56.7
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 4.2e-26 124.0 112 61.6
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 1.2e-25 122.5 93 65.6
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 4.7e-25 120.6 115 55.7
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.0e-24 119.4 174 40.2
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.9e-18 98.6 76 61.8
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 8.8e-16 89.7 83 56.6
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 2.0e-15 88.6 102 51.0
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.4e-15 87.4 49 75.5
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.4e-13 81.6 69 59.4
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.7e-12 78.2 62 59.7
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.7e-12 78.2 62 59.7
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 7.7e-12 76.6 50 68.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.7e-12 76.6 47 72.3
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.0e-11 76.3 47 72.3
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.9e-10 72.0 47 70.2
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 7.3e-10 70.1 42 78.6
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.6e-09 68.9 42 76.2
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 6.1e-09 67.0 42 78.6
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.8e-08 65.5 36 77.8
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 4.9e-06 57.4 36 61.1


User provided reference genes

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