Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-72 276.6 140 100.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.8e-42 174.5 134 70.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.3e-35 151.4 130 60.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.3e-35 151.4 130 60.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.9e-33 145.6 130 59.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.8e-33 145.2 130 60.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 6.4e-33 144.4 131 58.8
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.8e-30 136.3 134 57.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.9e-29 132.9 131 55.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.6e-28 128.6 141 49.6
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-27 127.1 137 50.4
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.8e-27 126.3 130 51.5
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 4.0e-27 125.2 132 48.5
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-26 123.6 129 51.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.5e-26 123.2 130 48.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.2e-25 119.4 132 50.8
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.2e-25 119.4 132 50.8
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.8e-25 118.6 132 50.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.9e-25 118.2 130 50.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-24 115.9 126 49.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.2e-24 115.5 130 47.7
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 4.2e-24 115.2 128 47.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 5.5e-24 114.8 129 48.1
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 7.1e-24 114.4 130 43.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 7.1e-24 114.4 125 46.4
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.6e-23 113.2 130 44.6
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 4.6e-23 111.7 130 43.8
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 7.9e-23 110.9 132 47.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 7.9e-23 110.9 130 43.8
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.0e-22 110.5 131 50.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.3e-22 110.2 93 58.1
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.8e-22 109.8 130 44.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.0e-22 109.0 130 43.8
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.1e-22 108.2 134 41.8
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 8.7e-22 107.5 134 47.0
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 8.7e-22 107.5 124 50.8
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 8.7e-22 107.5 115 52.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.9e-21 106.3 135 43.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.9e-21 106.3 130 42.3
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 7.4e-21 104.4 130 41.5
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.6e-21 104.0 130 44.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 9.6e-21 104.0 130 43.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.3e-20 103.6 137 42.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.6e-20 103.2 131 48.9
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.6e-20 103.2 131 48.9
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.1e-20 102.8 130 41.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.8e-20 102.4 134 43.3
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 3.7e-20 102.1 127 42.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.7e-20 102.1 127 42.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 3.7e-20 102.1 127 42.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.7e-20 102.1 127 42.5
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 6.2e-20 101.3 126 41.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 8.1e-20 100.9 131 42.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.1e-19 100.5 92 60.9
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.8e-19 99.8 132 41.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.1e-19 99.0 130 42.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.1e-19 99.0 130 42.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 4.0e-19 98.6 126 40.5
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 4.0e-19 98.6 92 53.3
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.0e-19 98.6 122 45.9
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 4.0e-19 98.6 113 50.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 4.0e-19 98.6 122 42.6
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 5.3e-19 98.2 129 39.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 5.3e-19 98.2 129 40.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 6.9e-19 97.8 126 42.1
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.0e-19 97.4 126 41.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.0e-19 97.4 129 41.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.0e-18 96.3 130 40.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.6e-18 95.9 132 43.2
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.4e-18 95.5 130 43.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.5e-18 95.1 127 40.9
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.8e-18 94.7 130 40.0
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.6e-18 94.4 122 41.0
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-17 94.0 122 41.0
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.0e-17 94.0 127 41.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-17 93.6 122 41.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.3e-17 93.6 122 41.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.2e-17 92.8 131 41.2
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 3.8e-17 92.0 111 45.9
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.9e-17 91.7 122 41.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.5e-17 91.3 133 37.6
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.1e-16 90.5 127 40.9
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-16 90.5 133 37.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.5e-16 89.4 91 46.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.2e-16 89.0 133 36.8
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.2e-16 89.0 122 40.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.5e-16 88.2 133 36.1
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 5.5e-16 88.2 132 37.1
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-15 87.0 112 42.9
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.1e-15 86.3 113 39.8
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.1e-15 86.3 110 40.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.5e-15 85.5 131 40.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.5e-15 85.5 119 42.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.6e-15 85.1 131 39.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-14 84.0 134 37.3
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.5e-13 79.3 105 41.9
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.3e-13 79.0 122 39.3
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.3e-13 78.6 104 39.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 5.7e-13 78.2 91 46.2
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.7e-13 78.2 135 33.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.3e-12 74.7 93 46.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.1e-11 73.9 91 46.2
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-09 66.2 128 32.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-09 65.9 134 33.6
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-09 65.9 134 35.1
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-09 65.9 134 35.1
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.9e-08 63.2 130 32.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.2e-08 62.4 60 51.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.2e-08 62.0 75 42.7
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.0e-06 57.4 82 40.2
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-06 57.4 90 32.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.3e-06 56.2 101 37.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.9e-06 55.5 113 34.5


User provided reference genes

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