Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A238T76 Lonicera japonica HOM05D002169 ORTHO05D020691 5.5e-78 294.3 154 100.0
Lj4A238G77 Lonicera japonica HOM05D002169 ORTHO05D006577 1.8e-44 183.0 118 86.4
Actinidia17335 Actinidia chinensis HOM05D002169 ORTHO05D006577 2.4e-41 172.6 118 79.7
Dinv40201 Davidia involucrata HOM05D002169 ORTHO05D006577 5.4e-41 171.4 118 79.7
vmacro20619 Vaccinium macrocarpon HOM05D002169 ORTHO05D006577 5.4e-41 171.4 118 78.8
Aqoxy6G01571 Aquilegia oxysepala HOM05D002169 ORTHO05D006577 7.1e-41 171.0 118 79.7
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla HOM05D002169 ORTHO05D006577 1.6e-40 169.9 118 78.8
CSS0008574 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 2.1e-40 169.5 118 77.1
HanXRQChr14g0443111 Helianthus annuus HOM05D002169 ORTHO05D006577 2.1e-40 169.5 118 78.0
Oeu012456.1 Olea europaea HOM05D002169 ORTHO05D006577 2.1e-40 169.5 118 77.1
GSVIVG01022300001 Vitis vinifera HOM05D002169 ORTHO05D006577 2.7e-40 169.1 118 78.0
Dinv28311 Davidia involucrata HOM05D002169 ORTHO05D006577 4.6e-40 168.3 118 78.0
Rhsim10G0192800 Rhododendron simsii HOM05D002169 ORTHO05D006577 4.6e-40 168.3 118 78.0
CDE06G1921 Ceratophyllum demersum HOM05D002169 ORTHO05D006577 6.0e-40 167.9 118 77.1
CSS0019965 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 7.8e-40 167.5 118 77.1
Actinidia22888 Actinidia chinensis HOM05D002169 ORTHO05D006577 1.7e-39 166.4 118 75.4
Lsat_1_v5_gn_2_73920 Lactuca sativa HOM05D002169 ORTHO05D006577 1.7e-39 166.4 118 77.1
Migut.L00778 Erythranthe guttata HOM05D002169 ORTHO05D006577 3.0e-39 165.6 118 78.0
DCAR_019080 Daucus carota HOM05D002169 ORTHO05D006577 3.9e-39 165.2 118 78.0
SGA_v2.0_scaffold132G34513 Striga asiatica HOM05D002169 ORTHO05D006577 3.9e-39 165.2 118 75.4
TAR381G0949 Trochodendron aralioides HOM05D002169 ORTHO05D006577 5.1e-39 164.9 118 73.7
ECA238G3790 Erigeron canadensis HOM05D002169 ORTHO05D006577 1.9e-38 162.9 118 74.6
Sc10g0009280 Simmondsia chinensis HOM05D002169 ORTHO05D006577 2.5e-38 162.5 119 74.8
EL10Ac6g15040 Beta vulgaris HOM05D002169 ORTHO05D006577 5.6e-38 161.4 119 73.9
SGA_v2.0_scaffold14G07128 Striga asiatica HOM05D002169 ORTHO05D006577 5.6e-38 161.4 118 73.7
MSTRG.3634 Avicennia marina HOM05D002169 ORTHO05D006577 7.3e-38 161.0 118 75.4
Glyma.06G143500 Glycine max HOM05D002169 ORTHO05D006577 2.8e-37 159.1 118 72.0
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea HOM05D002169 ORTHO05D006577 4.7e-37 158.3 118 72.0
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea HOM05D002169 ORTHO05D006577 6.2e-37 157.9 118 72.9
Glyma.04G221900 Glycine max HOM05D002169 ORTHO05D006577 6.2e-37 157.9 118 71.2
Lalb_Chr10g0097551 Lupinus albus HOM05D002169 ORTHO05D006577 6.2e-37 157.9 118 71.2
Lj4g0016756 Lotus japonicus HOM05D002169 ORTHO05D006577 8.1e-37 157.5 118 71.2
Psat4g104600 Pisum sativum HOM05D002169 ORTHO05D006577 8.1e-37 157.5 118 72.9
Cc07_g12000 Coffea canephora HOM05D002169 ORTHO05D006577 1.1e-36 157.1 118 72.0
RcHm_v2.0_Chr2g0096961 Rosa chinensis HOM05D002169 ORTHO05D006577 4.0e-36 155.2 118 69.5
Phvul.009G142600 Phaseolus vulgaris HOM05D002169 ORTHO05D006577 8.9e-36 154.1 119 70.6
Medtr8g073170 Medicago truncatula HOM05D002169 ORTHO05D006577 1.2e-35 153.7 118 69.5
Prupe.7G185100 Prunus persica HOM05D002169 ORTHO05D006577 1.2e-35 153.7 118 69.5
TPR.G13725 Trifolium pratense HOM05D002169 ORTHO05D006577 1.2e-35 153.7 118 69.5
Haze_03631 Corylus avellana HOM05D002169 ORTHO05D006577 1.5e-35 153.3 118 69.5
CiPaw.07G001100 Carya illinoinensis HOM05D002169 ORTHO05D006577 3.4e-35 152.1 118 70.3
MD15G1229000 Malus domestica HOM05D002169 ORTHO05D006577 3.4e-35 152.1 118 68.6
Ca_02844_v3 Cicer arietinum L. HOM05D002169 ORTHO05D006577 5.8e-35 151.4 118 68.6
QL06p053209 Quercus lobata HOM05D002169 ORTHO05D006577 7.6e-35 151.0 118 69.5
Nitab4.5_0008533g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 9.9e-35 150.6 119 71.4
Nitab4.5_0001467g0120 Nicotiana tabacum HOM05D002169 ORTHO05D006577 2.2e-34 149.4 119 70.6
Hund19690 Selenicereus undatus HOM05D002169 ORTHO05D006577 2.2e-34 149.4 118 68.6
AUR62016565 Chenopodium quinoa HOM05D002169 ORTHO05D006577 2.9e-34 149.1 119 71.4
Manes.01G156500 Manihot esculenta HOM05D002169 ORTHO05D006577 3.7e-34 148.7 118 70.3
MD02G1113900 Malus domestica HOM05D002169 ORTHO05D006577 4.9e-34 148.3 118 66.9
AUR62003736 Chenopodium quinoa HOM05D002169 ORTHO05D006577 1.1e-33 147.1 119 70.6
ATR0807G141 Amborella trichopoda HOM05D002169 ORTHO05D006577 1.4e-33 146.7 118 68.6
PGR004G0941 Punica granatum HOM05D002169 ORTHO05D006577 1.4e-33 146.7 118 66.1
MELO3C018432.2 Cucumis melo HOM05D002169 ORTHO05D006577 2.4e-33 146.0 118 66.9
CsaV3_7G008800 Cucumis sativus L. HOM05D002169 ORTHO05D006577 2.4e-33 146.0 118 66.9
Eucgr.J00205 Eucalyptus grandis HOM05D002169 ORTHO05D006577 2.4e-33 146.0 119 68.1
unitig_747.g21786 Utricularia gibba HOM05D002169 ORTHO05D006577 3.2e-33 145.6 118 70.3
Sed0000096 Sechium edule HOM05D002169 ORTHO05D006577 5.4e-33 144.8 118 66.1
Cfa007098 Carpinus fangiana HOM05D002169 ORTHO05D006577 7.1e-33 144.4 118 66.9
ClCG02G005730 Citrullus lanatus HOM05D002169 ORTHO05D006577 7.1e-33 144.4 118 66.1
Peaxi162Scf00040g03136 Petunia axillaris HOM05D002169 ORTHO05D006577 9.2e-33 144.1 118 65.3
PSO541G0991 Papaver somniferum HOM05D002169 ORTHO05D006577 1.2e-32 143.7 122 66.4
CANSAT64G0090 Cannabis sativa HOM05D002169 ORTHO05D006577 1.6e-32 143.3 119 67.2
CAN.G1238.30 Capsicum annuum HOM05D002169 ORTHO05D006577 1.6e-32 143.3 128 66.4
PSO675G7681 Papaver somniferum HOM05D002169 ORTHO05D006577 1.6e-32 143.3 122 65.6
Solyc02g082460.3 Solanum lycopersicum HOM05D002169 ORTHO05D006577 3.5e-32 142.1 119 68.1
Sopen02g027150 Solanum pennellii HOM05D002169 ORTHO05D006577 3.5e-32 142.1 119 68.1
FvH4_1g10170 Fragaria vesca HOM05D002169 ORTHO05D006577 1.3e-31 140.2 118 61.9
FAN23G0161 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.7e-31 139.8 118 61.9
FAN23G2634 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.7e-31 139.8 118 61.9
FAN26G1091 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-31 139.0 118 61.9
Cpa.g.sc6.358 Carica papaya HOM05D002169 ORTHO05D006577 3.9e-31 138.7 118 66.9
Os03g0129200 Oryza sativa ssp. japonica HOM05D002169 ORTHO05D006577 3.3e-30 135.6 118 63.6
Ciclev10024818m.g Citrus clementina HOM05D002169 ORTHO05D006577 5.6e-30 134.8 118 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis HOM05D002169 ORTHO05D006577 9.6e-30 134.0 118 61.9
Cfa013486 Carpinus fangiana HOM05D002169 ORTHO05D006577 9.6e-30 134.0 98 69.4
THA.LOC104819712 Tarenaya hassleriana HOM05D002169 ORTHO05D006577 1.2e-29 133.7 118 66.1
Pp3c16_17530 Physcomitrium patens HOM05D002169 ORTHO05D006577 2.1e-29 132.9 118 62.7
FAN19G1591 Fragaria x ananassa HOM05D002169 ORTHO05D006577 4.7e-29 131.7 129 56.6
CARHR107670 Cardamine hirsuta HOM05D002169 ORTHO05D006577 1.4e-28 130.2 118 65.3
Carub.0003s3157 Capsella rubella HOM05D002169 ORTHO05D006577 1.8e-28 129.8 118 65.3
Thecc.01G003600 Theobroma cacao HOM05D002169 ORTHO05D006577 1.8e-28 129.8 118 61.9
Thhalv10022534m.g Eutrema salsugineum HOM05D002169 ORTHO05D006577 2.4e-28 129.4 118 64.4
Mapoly0081s0047 Marchantia polymorpha HOM05D002169 ORTHO05D006577 3.1e-28 129.0 118 61.9
AL3G50440 Arabidopsis lyrata HOM05D002169 ORTHO05D006577 4.0e-28 128.6 118 64.4
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.2e-28 128.3 107 62.6
AT2G17510 Arabidopsis thaliana HOM05D002169 ORTHO05D006577 8.9e-28 127.5 118 63.6
Zm00001eb330250 Zea mays HOM05D002169 ORTHO05D020691 8.9e-28 127.5 119 58.8
BcaB07g31725 Brassica carinata HOM05D002169 ORTHO05D006577 1.2e-27 127.1 118 62.7
BcaC04g22967 Brassica carinata HOM05D002169 ORTHO05D006577 1.2e-27 127.1 118 62.7
C09p13440 Brassica napus HOM05D002169 ORTHO05D006577 1.2e-27 127.1 118 62.7
BolC9t54234H Brassica oleracea HOM05D002169 ORTHO05D006577 1.2e-27 127.1 118 62.7
A09p11420 Brassica napus HOM05D002169 ORTHO05D006577 1.5e-27 126.7 118 62.7
BraA09t36782Z Brassica rapa HOM05D002169 ORTHO05D006577 1.5e-27 126.7 118 62.7
Aa31LG8G14800 Aethionema arabicum HOM05D002169 ORTHO05D006577 2.0e-27 126.3 119 62.2
Zm00001eb002260 Zea mays HOM05D002169 ORTHO05D006577 2.6e-27 125.9 119 58.8
HPP92_021382 Vanilla planifolia HOM05D002169 ORTHO05D006577 3.4e-27 125.6 118 61.9
SMO228G0179 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 7.6e-27 124.4 119 59.7
FAN01G1564 Fragaria x ananassa HOM05D002169 ORTHO05D020691 9.9e-27 124.0 102 62.7
FAN06G1171 Fragaria x ananassa HOM05D002169 ORTHO05D020691 9.9e-27 124.0 98 65.3
Gohir.D07G178500 Gossypium hirsutum HOM05D002169 ORTHO05D006577 2.9e-26 122.5 119 58.8
Gorai.001G199700 Gossypium raimondii HOM05D002169 ORTHO05D006577 2.9e-26 122.5 119 58.8
TWI73G1258 Tripterygium wilfordii HOM05D002169 ORTHO05D006577 3.8e-26 122.1 119 62.2
Atru.chr3.27 Acer truncatum HOM05D002169 ORTHO05D006577 4.9e-26 121.7 120 59.2
Gohir.A07G171800 Gossypium hirsutum HOM05D002169 ORTHO05D006577 4.9e-26 121.7 119 58.8
Potri.007G059100 Populus trichocarpa HOM05D002169 ORTHO05D006577 4.9e-26 121.7 119 58.8
Sabra07G0050400 Salix brachista HOM05D002169 ORTHO05D006577 8.4e-26 120.9 119 58.8
FvH4_7g18421 Fragaria vesca HOM05D002169 ORTHO05D020691 2.4e-25 119.4 115 58.3
ECA238G0185 Erigeron canadensis HOM05D000109 ORTHO05D000520 9.3e-25 117.5 97 68.0
Duzib147G0840 Durio zibethinus HOM05D002169 ORTHO05D006577 2.1e-24 116.3 120 56.7
SHI29554 Sapria himalayana HOM05D002169 ORTHO05D006577 2.7e-24 115.9 155 45.8
Sp3g30870 Schrenkiella parvula HOM05D002169 ORTHO05D006577 1.7e-23 113.2 98 65.3
Psat0s2855g0120 Pisum sativum HOM05D002169 ORTHO05D020691 1.1e-22 110.5 94 67.0
VMungo1215G1369 Vigna mungo HOM05D002169 ORTHO05D006577 4.3e-22 108.6 84 67.9
CBR_g8384 Chara braunii HOM05D002169 ORTHO05D006577 2.1e-21 106.3 119 53.8
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 2.0e-19 99.8 145 42.8
Cre14.g613850 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 7.6e-19 97.8 110 45.5
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 9.9e-19 97.4 148 42.6
CsaV3_3G005680 Cucumis sativus L. HOM05D002169 ORTHO05D006577 1.9e-17 93.2 79 63.3
Medtr6g049200 Medicago truncatula HOM05D002169 ORTHO05D020691 7.1e-17 91.3 75 66.7
MCO02G146 Micromonas commoda HOM05D002169 ORTHO05D006577 7.1e-17 91.3 125 44.0
PRCOL_00000788 Prasinoderma coloniale HOM05D002169 ORTHO05D006577 3.9e-15 85.5 119 42.0
Psat0ss777g0240 Pisum sativum HOM05D001137 ORTHO05D001967 2.5e-14 82.8 54 77.8
SalBow6G5571 Salvia bowleyana HOM05D002169 ORTHO05D006577 5.6e-14 81.6 44 93.2
BcaNung02375 Brassica carinata HOM05D002169 ORTHO05D006577 1.3e-13 80.5 73 61.6
C07p60960 Brassica napus HOM05D002169 ORTHO05D040931 9.3e-09 64.3 45 66.7
Cfa024479 Carpinus fangiana HOM05D002169 ORTHO05D006577 7.4e-06 54.7 134 32.8


User provided reference genes

Program Settings