Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 2.2e-241 838.6 434 100.0
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 6.3e-111 405.2 541 50.1
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 6.1e-106 388.7 542 48.3
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.7e-103 380.6 508 50.2
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.9e-101 372.1 531 46.3
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 5.0e-100 369.0 541 45.7
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.4e-97 360.9 540 45.6
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.4e-96 355.1 542 45.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.5e-93 346.3 541 45.3
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.5e-92 341.7 456 49.3
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 2.1e-90 337.0 532 44.4
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 6.1e-90 335.5 535 43.4
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 8.0e-90 335.1 543 44.0
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 6.7e-89 332.0 539 41.9
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 5.7e-88 328.9 546 42.5
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 3.7e-87 326.2 524 44.1
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 8.2e-87 325.1 533 43.3
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 9.1e-86 321.6 535 43.2
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.5e-85 319.7 540 42.4
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.2e-84 317.0 537 41.9
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.5e-83 314.3 516 43.2
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 7.2e-83 312.0 513 43.7
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 3.6e-82 309.7 537 41.7
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 4.7e-82 309.3 541 40.9
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.0e-81 306.6 541 41.2
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 4.0e-81 306.2 538 40.9
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.8e-81 305.4 530 41.9
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 9.8e-80 301.6 541 40.3
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.8e-80 301.6 541 40.3
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 1.3e-79 301.2 478 43.5
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.7e-79 300.8 526 41.6
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.7e-79 300.8 526 41.6
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.8e-79 299.3 538 40.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.0e-77 293.9 538 41.3
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.5e-77 292.7 536 40.9
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.7e-76 290.8 518 40.9
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.2e-76 290.4 539 41.0
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 3.8e-76 289.7 538 40.9
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 5.5e-75 285.8 490 42.2
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.4e-73 281.2 524 41.0
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 2.0e-72 277.3 538 39.2
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 5.7e-72 275.8 485 42.1
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 5.7e-72 275.8 536 39.6
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 7.5e-72 275.4 535 40.0
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 7.5e-72 275.4 519 39.9
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.2e-71 273.9 511 40.5
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.8e-71 273.5 537 40.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 3.7e-71 273.1 487 42.1
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 6.3e-71 272.3 540 37.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.8e-70 270.8 533 38.8
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 1.8e-70 270.8 544 37.9
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 1.8e-70 270.8 544 37.9
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.4e-70 270.4 478 43.5
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.4e-70 270.4 570 38.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.6e-69 267.7 491 41.3
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 7.7e-69 265.4 526 39.7
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.0e-68 265.0 540 37.8
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.3e-68 264.6 523 39.8
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 5.0e-68 262.7 499 38.9
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.6e-68 262.3 541 39.6
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 8.6e-68 261.9 510 40.0
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 8.6e-68 261.9 539 38.8
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.5e-67 261.2 491 40.5
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.5e-67 261.2 542 36.5
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.9e-67 260.8 496 39.7
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 2.5e-67 260.4 518 37.8
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.3e-67 260.0 539 38.6
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.2e-67 258.8 496 40.9
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 7.2e-67 258.8 507 38.1
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 8.0e-66 255.4 542 37.6
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.8e-65 254.2 608 36.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.3e-65 253.8 475 40.2
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.2e-65 252.7 546 35.5
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.2e-64 251.5 608 35.9
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 2.6e-64 250.4 537 37.1
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-63 248.1 520 36.9
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 1.1e-62 245.0 528 37.7
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 5.4e-62 242.7 481 39.9
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.4e-62 242.7 520 38.5
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 5.0e-60 236.1 451 39.2
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.1e-59 235.0 484 38.6
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.9e-59 234.2 537 36.1
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.2e-58 231.5 506 36.6
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.8e-58 230.3 465 39.4
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 2.8e-58 230.3 466 38.8
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 3.6e-58 229.9 507 36.9
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.2e-57 226.1 528 37.7
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 4.4e-56 223.0 487 37.4
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 7.5e-56 222.2 471 37.8
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.7e-55 219.9 508 35.6
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 3.5e-53 213.4 458 37.6
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.0e-52 211.8 592 31.9
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.9e-51 207.6 500 35.0
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 3.3e-51 206.8 482 36.5
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.2e-50 204.9 593 31.0
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 8.1e-50 202.2 461 34.9
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.4e-49 201.4 465 35.9
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.5e-48 198.0 569 32.9
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.6e-48 197.2 483 35.6
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 3.4e-48 196.8 569 32.5
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 4.4e-48 196.4 535 32.5
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 7.5e-48 195.7 459 35.7
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 9.8e-48 195.3 461 36.9
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-47 194.5 419 39.9
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 3.7e-47 193.4 545 32.3
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.7e-47 193.4 423 39.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 5.4e-46 189.5 503 34.8
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.4e-46 189.5 488 34.0
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.6e-45 188.0 461 34.9
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 6.0e-45 186.0 521 35.1
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.3e-44 184.9 454 33.0
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.3e-44 184.9 454 33.0
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 3.9e-44 183.3 457 33.3
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 5.1e-44 183.0 467 34.3
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.5e-43 181.4 612 30.6
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 7.3e-43 179.1 461 36.0
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 9.5e-43 178.7 460 33.3
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 9.5e-43 178.7 460 33.3
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 2.8e-42 177.2 468 32.7
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 6.8e-41 172.6 489 34.2
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.9e-40 168.7 547 30.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 8.4e-39 165.6 452 33.4
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.9e-38 164.5 534 32.2
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.2e-37 161.8 565 30.6
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.0e-36 158.7 466 34.5
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.2e-32 145.2 297 39.7
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 6.4e-31 139.4 438 29.5
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.6e-27 126.3 547 26.5
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-17 94.4 426 29.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.0e-17 93.6 427 29.7
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 4.5e-16 90.1 264 33.0
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.0e-07 62.4 219 26.9
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.1e-06 58.9 386 25.1
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 2.5e-06 57.8 366 25.7
Pp3c9_5030 Physcomitrium patens HOM05D031362 ORTHO05D002722 4.2e-06 57.0 214 29.4


User provided reference genes

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