Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A236T25 Lonicera japonica HOM05D001594 ORTHO05D006997 1.3e-34 149.1 72 100.0
Nn5g30990 Nelumbo nucifera HOM05D001594 ORTHO05D006997 3.4e-14 81.3 44 79.5
Haze_03654 Corylus avellana HOM05D001594 ORTHO05D006997 1.3e-13 79.3 52 65.4
Haze_03660 Corylus avellana HOM05D001594 ORTHO05D006997 1.3e-13 79.3 52 65.4
Dinv08163 Davidia involucrata HOM05D001594 ORTHO05D006997 1.3e-13 79.3 42 81.0
CSS0026334 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D006997 3.8e-13 77.8 43 74.4
Cpa.g.sc365.6 Carica papaya HOM05D001594 ORTHO05D006997 5.0e-13 77.4 46 69.6
Peaxi162Scf01051g00145 Petunia axillaris HOM05D001594 ORTHO05D006997 1.9e-12 75.5 43 74.4
Nitab4.5_0000702g0160 Nicotiana tabacum HOM05D001594 ORTHO05D006997 2.5e-12 75.1 50 62.0
TAR628G0455 Trochodendron aralioides HOM05D001594 ORTHO05D006997 2.5e-12 75.1 43 76.7
QL06p052962 Quercus lobata HOM05D001594 ORTHO05D006997 4.2e-12 74.3 43 69.8
GSVIVG01026640001 Vitis vinifera HOM05D001594 ORTHO05D006997 4.2e-12 74.3 43 72.1
PSO541G4323 Papaver somniferum HOM05D001594 ORTHO05D006997 5.5e-12 73.9 43 74.4
PSO675G2586 Papaver somniferum HOM05D001594 ORTHO05D006997 5.5e-12 73.9 43 74.4
CiPaw.07G002700 Carya illinoinensis HOM05D001594 ORTHO05D006997 7.2e-12 73.6 42 71.4
Nitab4.5_0006839g0020 Nicotiana tabacum HOM05D001594 ORTHO05D006997 7.2e-12 73.6 46 65.2
SalBow3G0355 Salvia bowleyana HOM05D001594 ORTHO05D006997 7.2e-12 73.6 42 73.8
SalBow3G3852 Salvia bowleyana HOM05D001594 ORTHO05D006997 7.2e-12 73.6 42 73.8
Rhsim10G0195800 Rhododendron simsii HOM05D001594 ORTHO05D006997 3.6e-11 71.2 41 70.7
Thecc.01G005500 Theobroma cacao HOM05D001594 ORTHO05D006997 3.6e-11 71.2 42 69.0
Prupe.7G183000 Prunus persica HOM05D001594 ORTHO05D006997 4.6e-11 70.9 43 67.4
Migut.H02205 Erythranthe guttata HOM05D001594 ORTHO05D006997 7.9e-11 70.1 45 66.7
FvH4_1g10310 Fragaria vesca HOM05D001594 ORTHO05D006997 7.9e-11 70.1 43 72.1
FAN19G0400 Fragaria x ananassa HOM05D001594 ORTHO05D006997 7.9e-11 70.1 43 72.1
FAN23G2317 Fragaria x ananassa HOM05D001594 ORTHO05D006997 7.9e-11 70.1 43 72.1
HanXRQChr14g0442541 Helianthus annuus HOM05D001594 ORTHO05D006997 7.9e-11 70.1 42 71.4
MD15G1231200 Malus domestica HOM05D001594 ORTHO05D006997 7.9e-11 70.1 43 65.1
RcHm_v2.0_Chr2g0097151 Rosa chinensis HOM05D001594 ORTHO05D006997 1.0e-10 69.7 43 72.1
Actinidia17359 Actinidia chinensis HOM05D001594 ORTHO05D006997 1.4e-10 69.3 42 66.7
Solyc02g082690.3 Solanum lycopersicum HOM05D001594 ORTHO05D006997 1.4e-10 69.3 42 71.4
SGA_v2.0_scaffold108G30978 Striga asiatica HOM05D001594 ORTHO05D006997 1.4e-10 69.3 42 69.0
TWI09G0261 Tripterygium wilfordii HOM05D001594 ORTHO05D006997 2.3e-10 68.6 42 64.3
Sc16g0001660 Simmondsia chinensis HOM05D001594 ORTHO05D006997 3.9e-10 67.8 43 60.5
VMungo0251G3380 Vigna mungo HOM05D001594 ORTHO05D006997 3.9e-10 67.8 46 63.0
Sabra05G0083900 Salix brachista HOM05D001594 ORTHO05D006997 5.1e-10 67.4 43 65.1
MSTRG.2742 Avicennia marina HOM05D001594 ORTHO05D006997 6.7e-10 67.0 42 66.7
Gohir.A02G177700 Gossypium hirsutum HOM05D001594 ORTHO05D006997 6.7e-10 67.0 42 66.7
Gohir.D03G002100 Gossypium hirsutum HOM05D001594 ORTHO05D006997 6.7e-10 67.0 42 66.7
Gorai.003G002400 Gossypium raimondii HOM05D001594 ORTHO05D006997 6.7e-10 67.0 42 66.7
MBI08_g12259_MAGBIO Magnolia biondii HOM05D001594 ORTHO05D006997 6.7e-10 67.0 43 67.4
Atru.chr3.133 Acer truncatum HOM05D001594 ORTHO05D006997 8.8e-10 66.6 43 65.1
AT4G35560 Arabidopsis thaliana HOM05D001594 ORTHO05D006997 8.8e-10 66.6 43 62.8
Ciclev10024783m.g Citrus clementina HOM05D001594 ORTHO05D006997 8.8e-10 66.6 43 67.4
Eucgr.J02536 Eucalyptus grandis HOM05D001594 ORTHO05D006997 8.8e-10 66.6 43 62.8
Lsat_1_v5_gn_2_73661 Lactuca sativa HOM05D001594 ORTHO05D006997 8.8e-10 66.6 42 66.7
Potri.005G101600 Populus trichocarpa HOM05D001594 ORTHO05D006997 8.8e-10 66.6 43 65.1
vmacro20632 Vaccinium macrocarpon HOM05D001594 ORTHO05D006997 8.8e-10 66.6 41 65.9
AUR62005762 Chenopodium quinoa HOM05D001594 ORTHO05D006997 1.1e-09 66.2 43 65.1
Glyma.16G116200 Glycine max HOM05D001594 ORTHO05D006997 1.1e-09 66.2 46 63.0
Phvul.003G270100 Phaseolus vulgaris HOM05D001594 ORTHO05D006997 1.5e-09 65.9 46 63.0
Sed0003551 Sechium edule HOM05D001594 ORTHO05D006997 2.5e-09 65.1 45 60.0
COL.COLO4_22550 Corchorus olitorius HOM05D001594 ORTHO05D006997 3.3e-09 64.7 42 64.3
Aa31LG6G12530 Aethionema arabicum HOM05D001594 ORTHO05D006997 4.3e-09 64.3 43 62.8
BcaNung04338 Brassica carinata HOM05D001594 ORTHO05D006997 5.7e-09 63.9 43 60.5
BcaNung05033 Brassica carinata HOM05D001594 ORTHO05D006997 5.7e-09 63.9 43 60.5
C07p61240 Brassica napus HOM05D001594 ORTHO05D006997 5.7e-09 63.9 43 60.5
CARHR243900 Cardamine hirsuta HOM05D001594 ORTHO05D006997 5.7e-09 63.9 43 60.5
Ca_02854_v3 Cicer arietinum L. HOM05D001594 ORTHO05D006997 7.4e-09 63.5 43 60.5
Actinidia22898 Actinidia chinensis HOM05D001594 ORTHO05D006997 9.7e-09 63.2 43 60.5
EL10Ac6g13185 Beta vulgaris HOM05D001594 ORTHO05D006997 9.7e-09 63.2 43 60.5
Medtr8g073335 Medicago truncatula HOM05D001594 ORTHO05D006997 9.7e-09 63.2 44 63.6
A03p63680 Brassica napus HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 60.5
BraA03t15439Z Brassica rapa HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 60.5
Carub.0007s0476 Capsella rubella HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 58.1
Glyma.11G085900 Glycine max HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 62.8
Manes.02G114000 Manihot esculenta HOM05D001594 ORTHO05D006997 1.3e-08 62.8 42 59.5
Phvul.002G116651 Phaseolus vulgaris HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 62.8
VMungo1215G2914 Vigna mungo HOM05D001594 ORTHO05D006997 1.3e-08 62.8 43 62.8
Glyma.09G198200 Glycine max HOM05D001594 ORTHO05D006997 1.7e-08 62.4 44 59.1
Lj2g0008891 Lotus japonicus HOM05D001594 ORTHO05D006997 1.7e-08 62.4 43 60.5
Sp7g33340 Schrenkiella parvula HOM05D001594 ORTHO05D006997 1.7e-08 62.4 43 60.5
ECA238G2681 Erigeron canadensis HOM05D001594 ORTHO05D006997 2.2e-08 62.0 42 61.9
Hund03603 Selenicereus undatus HOM05D001594 ORTHO05D006997 2.2e-08 62.0 43 60.5
AL7G15600 Arabidopsis lyrata HOM05D001594 ORTHO05D006997 2.8e-08 61.6 43 55.8
BolC7t46550H Brassica oleracea HOM05D001594 ORTHO05D006997 2.8e-08 61.6 42 59.5
ClCG10G000280 Citrullus lanatus HOM05D001594 ORTHO05D006997 2.8e-08 61.6 43 60.5
THA.LOC104819720 Tarenaya hassleriana HOM05D001594 ORTHO05D006997 2.8e-08 61.6 43 55.8
TPR.G13734 Trifolium pratense HOM05D001594 ORTHO05D006997 2.8e-08 61.6 44 61.4
Thhalv10024291m.g Eutrema salsugineum HOM05D001594 ORTHO05D006997 3.7e-08 61.2 43 55.8
Psat4g103800 Pisum sativum HOM05D001594 ORTHO05D006997 3.7e-08 61.2 44 61.4
Cc07_g11860 Coffea canephora HOM05D001594 ORTHO05D006997 4.8e-08 60.8 42 54.8
AUR62028795 Chenopodium quinoa HOM05D001594 ORTHO05D006997 1.1e-07 59.7 42 59.5
THA.LOC104804294 Tarenaya hassleriana HOM05D001594 ORTHO05D006997 1.1e-07 59.7 43 58.1
Aqoxy6G01623 Aquilegia oxysepala HOM05D001594 ORTHO05D006997 1.4e-07 59.3 39 61.5
Lalb_Chr05g0229621 Lupinus albus HOM05D001594 ORTHO05D006997 1.8e-07 58.9 44 56.8
Lalb_Chr16g0380021 Lupinus albus HOM05D001594 ORTHO05D006997 1.8e-07 58.9 44 56.8
Medtr5g024210 Medicago truncatula HOM05D001594 ORTHO05D006997 2.4e-07 58.5 70 44.3
arahy.Tifrunner.gnm1.ann1.738LAH Arachis hypogaea HOM05D001594 ORTHO05D006997 3.1e-07 58.2 43 55.8
Lj4g0005107 Lotus japonicus HOM05D001594 ORTHO05D006997 3.1e-07 58.2 41 58.5
arahy.Tifrunner.gnm1.ann1.QEV1Q9 Arachis hypogaea HOM05D001594 ORTHO05D006997 4.1e-07 57.8 43 55.8
CDE05G2756 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 4.1e-07 57.8 41 58.5
Ca_24982_v3 Cicer arietinum L. HOM05D001594 ORTHO05D006997 4.1e-07 57.8 58 48.3
TPR.G33895 Trifolium pratense HOM05D001594 ORTHO05D006997 4.1e-07 57.8 43 55.8
ATR0807G039 Amborella trichopoda HOM05D001594 ORTHO05D006997 1.2e-06 56.2 38 65.8
MELO3C013725.2 Cucumis melo HOM05D001594 ORTHO05D006997 1.2e-06 56.2 39 59.0
PGR083G2182 Punica granatum HOM05D001594 ORTHO05D006997 1.2e-06 56.2 43 58.1
Psat2g148240 Pisum sativum HOM05D001594 ORTHO05D006997 2.0e-06 55.5 42 54.8
SEGI_33924 Sequoiadendron giganteum HOM05D001594 ORTHO05D002862 2.0e-06 55.5 44 52.3
Os04g0564700 Oryza sativa ssp. japonica HOM05D001594 ORTHO05D006997 5.9e-06 53.9 42 52.4


User provided reference genes

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