Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 4.4e-272 941.4 784 100.0
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 5.5e-158 562.4 771 52.5
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.0e-156 556.2 771 55.9
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.8e-140 504.2 766 58.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.6e-139 500.4 771 56.7
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.0e-136 490.7 757 51.1
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.7e-136 490.3 719 56.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 8.6e-135 485.3 768 51.6
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.9e-134 484.2 761 64.7
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 4.3e-134 483.0 774 54.0
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.6e-133 481.1 761 56.2
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 2.1e-133 480.7 728 56.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.8e-132 477.6 765 59.0
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 8.9e-132 475.3 761 63.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 4.4e-131 473.0 799 49.4
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.3e-130 471.5 773 53.2
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.9e-129 467.6 761 53.1
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 9.2e-129 465.3 416 66.1
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 2.7e-128 463.8 769 57.1
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 8.6e-127 458.8 771 49.5
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 7.3e-126 455.7 772 52.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.6e-125 453.4 760 53.8
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 5.2e-124 449.5 766 52.2
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 2.0e-123 447.6 778 50.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.9e-121 441.0 734 51.0
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.2e-117 428.3 736 53.0
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 4.7e-117 426.4 760 52.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 3.1e-116 423.7 415 61.2
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.1e-116 423.7 724 52.2
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 5.2e-116 422.9 771 47.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 6.8e-116 422.5 761 53.5
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 6.8e-116 422.5 415 61.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.3e-114 418.3 775 54.3
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.7e-114 417.9 724 54.1
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.7e-114 417.9 773 48.5
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.9e-114 417.2 772 52.2
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.2e-112 411.8 784 50.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.7e-112 410.6 795 51.8
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.6e-112 409.8 739 52.8
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.8e-112 409.1 770 49.7
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.1e-110 405.2 771 43.3
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 2.5e-110 404.1 770 47.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 5.6e-110 402.9 774 47.2
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.8e-109 400.6 752 43.9
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.8e-109 399.8 767 53.2
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.2e-109 399.4 766 51.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.0e-108 396.7 765 52.7
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 5.8e-107 392.9 760 49.1
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.3e-106 391.7 769 52.0
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.3e-106 391.7 710 49.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.9e-106 390.6 775 57.5
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.9e-106 390.6 765 52.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 3.8e-106 390.2 737 51.7
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.2e-105 386.7 766 52.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 9.3e-105 385.6 732 57.2
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.2e-104 385.2 777 60.2
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.1e-104 384.4 772 51.6
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 3.5e-104 383.6 772 51.4
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 3.0e-103 380.6 772 49.7
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.5e-102 377.5 771 49.0
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.3e-102 376.7 773 45.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 5.6e-102 376.3 416 67.1
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 9.6e-102 375.6 726 51.0
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 8.1e-101 372.5 428 60.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 8.1e-101 372.5 428 60.3
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.8e-100 371.3 749 49.9
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.8e-100 371.3 770 47.8
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 3.1e-100 370.5 756 50.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-98 365.2 730 51.6
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.2e-98 364.4 736 47.3
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 4.9e-98 363.2 759 51.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 4.9e-98 363.2 747 45.6
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 8.4e-98 362.5 739 51.2
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.9e-97 361.3 759 47.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.9e-97 361.3 737 51.2
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 5.5e-97 359.8 770 49.4
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.6e-96 358.2 765 49.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-96 357.1 771 46.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.9e-95 353.6 771 49.9
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.9e-95 353.6 771 49.9
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 3.9e-95 353.6 728 53.3
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 4.0e-92 343.6 760 46.1
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.1e-89 335.5 400 59.2
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 9.3e-89 332.4 409 58.9
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 5.1e-87 326.6 408 48.3
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 6.7e-87 326.2 768 54.9
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.5e-86 325.1 789 46.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.3e-86 323.6 406 62.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 7.4e-86 322.8 764 50.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 5.3e-84 316.6 779 41.7
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.2e-83 315.5 759 48.7
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.5e-80 303.9 768 45.2
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.1e-78 298.9 757 43.5
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.1e-76 290.4 763 42.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 4.5e-75 287.0 765 45.0
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 2.9e-74 284.3 728 44.4
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 6.5e-74 283.1 406 45.8
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 6.1e-72 276.6 791 44.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 6.9e-68 263.1 774 43.7
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.8e-60 238.4 235 58.7
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.6e-59 234.6 405 42.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.7e-58 231.9 217 60.4
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.6e-56 225.3 741 31.2
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.5e-54 218.8 408 41.9
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 3.3e-54 217.6 192 66.7
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-46 192.2 161 72.7
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.3e-42 179.1 217 61.8
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 6.5e-42 176.8 231 64.9
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.0e-39 169.5 694 26.7
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-34 152.5 303 41.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.9e-34 151.4 410 33.9
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.3e-31 141.7 123 69.1
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 7.5e-30 136.7 570 48.2
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 8.3e-29 133.3 176 47.2
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.8e-28 132.1 196 58.2
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.2e-28 131.3 104 75.0
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 7.8e-27 126.7 97 76.3
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-25 122.9 166 50.6
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.0e-23 116.3 524 47.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 6.4e-21 107.1 95 82.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-20 104.8 70 74.3
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.4e-20 104.0 152 48.0
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.0e-18 99.8 112 53.6
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.3e-18 99.4 153 46.4
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 3.6e-16 91.3 79 57.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 8.3e-13 80.1 139 37.4
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 7.1e-12 77.0 136 41.9
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-11 75.9 77 59.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.0e-10 73.2 44 84.1
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.5e-09 68.6 56 67.9
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.3e-09 68.2 121 39.7
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.3e-09 67.0 66 59.1
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.1e-08 65.5 43 79.1
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 2.1e-08 65.5 43 79.1
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.8e-08 65.1 88 42.0
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.6e-06 58.5 64 53.1
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 9.9e-06 56.6 73 42.5


User provided reference genes

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