Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.4e-215 751.9 380 100.0
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 8.2e-123 444.5 368 63.6
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.3e-116 422.5 356 62.6
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 2.4e-114 416.4 374 59.4
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 5.3e-114 415.2 374 59.1
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.0e-112 411.0 361 61.8
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 6.5e-112 408.3 364 61.5
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 6.5e-112 408.3 374 59.6
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 8.5e-112 407.9 366 61.5
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.9e-111 406.8 355 63.1
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 4.6e-110 402.1 374 60.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.4e-109 400.6 353 60.9
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 3.0e-109 399.4 341 63.3
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.0e-109 399.4 374 59.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.1e-109 398.7 336 61.6
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 6.7e-109 398.3 374 57.5
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 8.8e-109 397.9 316 64.9
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 1.5e-108 397.1 341 61.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.0e-108 396.7 338 61.8
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 2.5e-108 396.4 341 61.6
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.7e-107 392.5 341 60.7
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 6.3e-107 391.7 341 60.7
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 8.2e-107 391.3 283 70.0
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 8.2e-107 391.3 371 57.7
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.4e-106 390.6 363 58.7
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.8e-106 390.2 364 57.7
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.4e-106 389.8 364 58.0
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.5e-105 387.1 360 57.8
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 5.9e-105 385.2 341 59.2
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 7.7e-105 384.8 364 57.1
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.0e-104 384.4 353 58.9
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.0e-104 384.4 291 66.3
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.3e-104 384.0 318 61.0
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.7e-104 383.6 332 62.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 4.2e-103 379.0 324 61.4
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 7.2e-103 378.3 298 63.8
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.7e-102 376.3 364 59.1
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 4.7e-102 375.6 354 57.9
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.4e-101 374.0 347 57.1
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.4e-101 374.0 367 56.9
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 6.7e-101 371.7 326 61.0
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 6.7e-101 371.7 326 61.0
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 8.8e-101 371.3 348 60.3
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 8.8e-101 371.3 324 58.6
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.1e-100 370.9 367 58.0
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.5e-100 370.5 364 56.3
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 3.3e-100 369.4 304 63.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 3.3e-100 369.4 360 58.1
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 9.7e-100 367.9 313 59.4
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.8e-99 366.3 360 57.8
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 3.7e-99 365.9 325 61.2
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.8e-98 363.6 336 60.1
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 7.0e-98 361.7 282 64.9
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 7.0e-98 361.7 371 53.9
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 5.9e-97 358.6 363 54.5
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.2e-96 356.7 298 63.1
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.2e-96 356.7 373 53.1
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.9e-96 356.3 379 54.4
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 6.5e-96 355.1 336 54.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 6.5e-96 355.1 316 60.1
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 8.5e-96 354.8 335 53.7
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 8.5e-96 354.8 293 60.8
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 8.5e-96 354.8 293 59.4
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.1e-95 354.4 315 59.0
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.4e-95 354.0 339 53.4
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.4e-95 354.0 339 53.4
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.2e-95 352.8 384 51.8
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 3.2e-95 352.8 296 62.2
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 4.2e-95 352.4 339 53.1
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 9.4e-95 351.3 352 54.5
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.7e-94 349.7 372 50.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 6.1e-94 348.6 377 50.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 5.2e-93 345.5 288 58.3
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 5.7e-92 342.0 324 53.1
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.3e-91 340.9 349 52.1
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.4e-90 336.7 352 50.9
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 2.4e-90 336.7 365 51.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 5.3e-90 335.5 334 53.6
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.6e-89 334.0 360 49.7
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 7.7e-89 331.6 294 55.4
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 5.0e-88 328.9 285 65.3
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 4.2e-87 325.9 329 53.8
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 5.5e-87 325.5 364 50.3
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 4.0e-85 319.3 283 57.6
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 4.0e-85 319.3 298 55.0
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 5.7e-84 315.5 289 54.3
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 7.0e-82 308.5 276 55.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.6e-81 307.4 264 57.6
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.0e-80 304.7 334 48.8
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.7e-80 303.9 370 49.7
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 4.2e-79 299.3 370 47.0
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.2e-78 297.7 263 56.7
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.8e-75 286.6 342 47.4
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 7.7e-73 278.5 235 60.4
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.9e-72 276.6 293 50.2
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 9.8e-68 261.5 310 47.4
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 3.6e-62 243.0 235 55.3
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 6.1e-62 242.3 291 45.4
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.8e-61 240.7 222 61.3
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 4.0e-61 239.6 250 55.6
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.0e-60 237.3 293 43.7
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 5.8e-60 235.7 309 41.4
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 5.8e-60 235.7 215 58.1
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.0e-52 210.7 192 58.9
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 3.2e-50 203.4 239 49.4
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.7e-48 197.6 286 42.7
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 3.9e-48 196.4 250 46.0
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.9e-48 196.4 377 36.9
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.9e-47 194.1 212 51.4
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 7.3e-47 192.2 248 44.8
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 7.3e-47 192.2 250 45.6
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 4.6e-41 172.9 290 38.6
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.3e-40 171.4 313 36.7
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.6e-38 164.5 285 38.9
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 5.8e-36 156.0 116 62.9
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 7.6e-36 155.6 118 60.2
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 2.2e-35 154.1 134 67.9
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 1.2e-33 148.3 111 70.3
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.6e-33 147.9 166 48.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 7.8e-33 145.6 168 45.2
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.6e-30 137.9 128 58.6
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.2e-28 131.7 102 55.9
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.5e-28 131.3 188 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 9.6e-23 112.1 189 34.9
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 2.9e-19 100.5 97 55.7
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 6.4e-19 99.4 109 49.5
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.0e-16 90.5 72 55.6
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 5.6e-15 86.3 66 57.6
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 2.8e-14 84.0 53 66.0
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.7e-14 83.6 64 56.2
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 6.2e-14 82.8 94 39.4
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-13 81.6 64 53.1
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.8e-13 81.3 70 54.3
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 5.3e-13 79.7 102 43.1
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.9e-10 71.2 73 46.6
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 6.0e-09 66.2 60 61.7
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 1.8e-08 64.7 60 61.7


User provided reference genes

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