Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.2e-170 603.2 324 100.0
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 5.0e-81 305.4 366 54.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 5.4e-75 285.4 369 52.6
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 7.3e-72 275.0 363 52.3
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.2e-71 274.2 363 51.8
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.8e-70 268.5 363 50.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.1e-67 261.2 355 51.3
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.4e-67 260.8 357 51.0
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.2e-67 258.1 357 51.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.6e-66 257.3 384 48.4
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.6e-66 257.3 375 49.3
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.5e-66 256.1 352 52.0
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 6.0e-66 255.4 364 50.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.0e-65 254.6 384 48.7
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.0e-65 254.6 373 49.1
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.3e-65 254.2 377 48.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.3e-65 253.4 403 46.7
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 6.6e-65 251.9 361 49.9
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 8.6e-65 251.5 378 48.1
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 9.6e-64 248.1 358 50.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-63 247.7 373 47.5
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.0e-62 242.7 380 46.3
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.5e-61 240.7 373 46.1
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.5e-61 240.7 377 47.7
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.4e-61 239.6 452 44.0
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.4e-61 239.6 365 47.9
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.8e-61 238.8 380 46.6
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 9.9e-61 238.0 385 46.5
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.3e-60 237.7 378 48.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.9e-60 236.5 351 48.1
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.1e-59 234.6 372 48.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.9e-59 233.8 375 47.5
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.2e-59 233.0 390 43.3
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 7.1e-59 231.9 383 46.0
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.1e-59 231.9 388 46.1
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.6e-58 229.2 366 45.6
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.7e-57 227.3 369 47.4
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.3e-57 226.9 373 44.8
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.9e-57 226.1 350 46.0
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.9e-57 226.1 377 45.4
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 3.9e-57 226.1 376 44.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 8.7e-57 224.9 371 48.2
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.9e-56 223.8 370 48.1
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-56 223.8 398 42.2
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.3e-56 223.0 374 44.9
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 4.3e-56 222.6 377 46.7
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.3e-56 222.6 371 46.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 7.3e-56 221.9 380 45.3
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.3e-55 221.1 358 48.3
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.3e-55 221.1 348 46.3
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.8e-55 219.2 371 44.5
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 6.2e-55 218.8 359 47.1
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.4e-54 217.6 372 46.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-54 217.6 384 43.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.8e-54 217.2 365 45.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-53 214.2 389 44.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.0e-53 213.8 363 42.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.4e-53 213.0 371 43.7
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 3.4e-53 213.0 364 46.4
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.7e-52 210.7 335 46.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.8e-52 209.5 386 45.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 4.9e-52 209.1 380 43.9
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 4.9e-52 209.1 373 44.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.4e-52 208.8 366 43.4
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.1e-51 208.0 391 45.0
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.4e-51 206.8 387 44.7
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.1e-51 205.3 356 44.4
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 9.3e-51 204.9 359 47.1
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 2.1e-50 203.8 358 43.6
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 3.5e-50 203.0 376 44.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 6.0e-50 202.2 378 44.7
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.0e-50 202.2 407 40.8
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.3e-49 201.1 360 40.8
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.3e-49 200.3 361 46.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 5.1e-49 199.1 388 43.6
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 5.1e-49 199.1 369 45.0
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.7e-49 198.4 352 44.9
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-48 198.0 336 42.9
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.5e-48 197.6 381 43.3
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.9e-48 197.2 332 44.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 5.6e-48 195.7 335 46.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.6e-47 194.1 371 43.4
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.1e-47 193.7 280 48.2
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.6e-47 193.0 361 45.4
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.6e-47 193.0 349 41.8
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.8e-47 192.6 350 44.0
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.1e-46 191.4 347 44.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.3e-46 189.1 365 42.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 2.6e-45 186.8 361 43.8
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 9.9e-45 184.9 367 40.3
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-44 184.5 325 42.5
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.7e-44 184.1 380 40.8
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.2e-44 183.7 381 41.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 6.4e-44 182.2 305 43.0
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-43 181.0 358 41.6
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.4e-43 180.3 367 42.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.2e-43 179.9 351 41.6
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-42 177.9 357 41.7
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-42 177.9 357 40.9
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.6e-42 177.6 325 44.6
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.6e-42 177.6 332 44.3
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.3e-41 174.5 351 41.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.8e-41 174.1 356 41.6
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 8.7e-41 171.8 312 40.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 8.7e-41 171.8 317 44.2
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.9e-40 170.6 360 39.2
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 4.3e-40 169.5 331 43.5
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.6e-40 169.1 369 40.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 9.6e-40 168.3 354 40.1
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-39 167.5 352 40.6
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.6e-39 167.5 365 38.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.7e-39 166.4 357 40.6
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 4.8e-39 166.0 354 40.7
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 6.2e-39 165.6 359 41.8
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.1e-38 164.9 332 41.0
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.1e-38 163.3 362 37.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 3.1e-38 163.3 359 40.9
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.2e-37 161.4 311 44.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.2e-37 161.4 257 47.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.6e-37 160.2 335 40.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 3.4e-37 159.8 323 40.6
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.9e-36 156.8 361 39.9
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-35 154.1 310 41.0
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 3.2e-35 153.3 320 40.9
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.2e-34 151.4 325 37.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.6e-34 151.0 340 37.6
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.5e-34 149.8 310 40.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 8.7e-33 145.2 354 37.9
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.5e-32 144.4 318 39.6
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.5e-32 144.4 364 38.5
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 7.4e-32 142.1 344 33.4
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 4.8e-31 139.4 288 39.2
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.8e-30 137.5 371 33.2
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 6.9e-30 135.6 335 35.2
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.5e-29 132.9 373 34.0
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.0e-28 131.7 341 35.2
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.2e-27 126.7 273 38.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.5e-27 125.9 270 40.0
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.7e-26 123.6 355 33.2
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 1.3e-25 121.3 233 40.3
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.3e-25 121.3 300 37.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.3e-25 120.6 372 33.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 5.7e-24 115.9 386 32.4
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.4e-24 115.5 206 48.1
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.2e-23 114.0 228 43.9
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.3e-23 112.5 355 33.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 8.2e-23 112.1 317 37.2
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.1e-22 111.7 298 36.2
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.4e-22 111.3 306 35.0
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.8e-22 110.9 398 32.7
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 9.0e-22 108.6 298 36.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.2e-21 108.2 184 45.1
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.3e-20 104.8 344 31.4
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 5.0e-20 102.8 251 36.7
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.2e-19 100.1 299 34.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.2e-19 100.1 299 34.1
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.2e-18 98.2 199 43.7
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-16 91.3 330 32.7
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 7.4e-16 89.0 201 39.8
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.3e-15 88.2 186 42.5
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.7e-15 87.8 347 30.5
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.7e-15 86.7 203 39.9
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 6.3e-15 85.9 254 37.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.4e-14 84.7 244 38.1
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 3.1e-14 83.6 231 34.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.1e-14 83.2 208 38.5
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.1e-14 83.2 208 38.5
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.4e-13 80.1 121 50.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 4.7e-10 69.7 130 43.1
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 5.7e-08 62.8 306 24.2
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.2e-07 60.8 66 48.5
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.2e-07 60.8 113 43.4
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 6.3e-07 59.3 318 28.3
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 8.2e-07 58.9 288 27.1
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 2.4e-06 57.4 410 25.6


User provided reference genes

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