Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.1e-70 270.0 151 100.0
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 3.8e-47 191.8 146 69.2
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.9e-46 189.5 113 77.9
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 2.1e-45 186.0 113 76.1
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 4.6e-45 184.9 113 76.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 5.1e-44 181.4 111 77.5
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 8.7e-44 180.6 105 81.0
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 3.3e-43 178.7 111 75.7
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 5.7e-43 177.9 141 63.1
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.6e-43 177.2 109 75.2
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.6e-43 177.2 109 75.2
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.8e-41 172.9 111 73.0
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 6.9e-41 171.0 151 58.9
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.7e-39 166.4 151 58.9
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.0e-39 164.9 113 68.1
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.5e-38 162.5 112 67.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 4.2e-38 161.8 111 70.3
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 5.5e-38 161.4 128 71.1
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 7.2e-38 161.0 110 66.4
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.2e-37 160.2 106 70.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 3.6e-37 158.7 110 65.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 3.9e-36 155.2 115 62.6
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.1e-36 154.8 143 54.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.7e-36 154.5 112 66.1
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.7e-36 154.5 112 66.1
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 6.7e-36 154.5 112 66.1
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 8.7e-36 154.1 108 65.7
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-35 153.7 113 63.7
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.5e-35 153.3 108 64.8
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.5e-35 153.3 113 61.9
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 3.3e-35 152.1 111 66.7
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 3.3e-35 152.1 112 66.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 7.4e-35 151.0 144 55.6
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 9.7e-35 150.6 96 69.8
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 9.7e-35 150.6 112 66.1
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.8e-34 149.1 111 61.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 8.2e-34 147.5 113 63.7
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.4e-33 146.7 110 63.6
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.4e-33 146.7 105 66.7
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.8e-33 146.4 106 67.0
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.4e-33 146.0 115 63.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.4e-33 146.0 113 58.4
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.1e-33 145.6 109 61.5
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 4.1e-33 145.2 113 63.7
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.1e-33 145.2 114 61.4
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 4.1e-33 145.2 113 63.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 5.3e-33 144.8 113 61.9
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 6.9e-33 144.4 110 61.8
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 6.9e-33 144.4 108 63.9
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 6.9e-33 144.4 111 64.0
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 9.1e-33 144.1 116 66.4
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.2e-32 143.7 110 61.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.5e-32 143.3 100 67.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 2.0e-32 142.9 114 60.5
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.0e-32 142.9 113 61.1
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.6e-32 142.5 113 61.1
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 2.6e-32 142.5 113 61.9
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.6e-32 142.5 114 59.6
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 4.5e-32 141.7 113 58.4
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 5.9e-32 141.4 109 61.5
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 7.7e-32 141.0 112 60.7
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.0e-31 140.6 110 60.9
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 1.0e-31 140.6 110 60.9
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.3e-31 140.2 113 59.3
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.3e-31 140.2 113 62.8
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.2e-31 139.4 104 63.5
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 3.8e-31 138.7 114 59.6
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 3.8e-31 138.7 113 57.5
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 3.8e-31 138.7 117 59.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 56.6
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 58.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 6.5e-31 137.9 113 60.2
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 8.5e-31 137.5 105 61.9
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.1e-30 137.1 110 58.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.1e-30 137.1 113 60.2
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.4e-30 136.7 108 57.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 2.5e-30 136.0 107 59.8
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.5e-30 136.0 113 61.9
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 2.5e-30 136.0 110 58.2
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.5e-30 134.8 144 50.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 5.5e-30 134.8 111 59.5
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 7.2e-30 134.4 111 55.0
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 7.2e-30 134.4 109 57.8
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 9.4e-30 134.0 106 56.6
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.2e-29 133.7 107 57.9
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.1e-29 132.9 110 60.0
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.7e-29 132.5 150 58.0
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.7e-29 132.5 111 54.1
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.6e-29 132.1 106 56.6
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 4.6e-29 131.7 110 60.0
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 4.6e-29 131.7 112 56.2
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 6.1e-29 131.3 113 59.3
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.1e-29 131.3 113 59.3
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.0e-28 130.6 113 57.5
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.0e-28 130.6 117 59.0
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.0e-28 130.6 110 56.4
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.8e-28 129.8 113 58.4
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 2.0e-27 126.3 114 59.6
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 5.7e-27 124.8 106 59.4
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 9.7e-27 124.0 114 58.8
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 6.3e-26 121.3 99 54.5
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 8.2e-26 120.9 117 51.3
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.4e-25 120.2 118 54.2
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.4e-25 120.2 114 57.0
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.8e-25 119.8 100 55.0
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.4e-25 119.4 117 51.3
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.4e-25 119.4 112 55.4
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 3.1e-25 119.0 91 59.3
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 4.1e-25 118.6 175 42.9
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 3.4e-24 115.5 110 54.5
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 5.9e-24 114.8 112 49.1
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 8.5e-23 110.9 106 51.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.1e-22 110.5 98 54.1
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 5.5e-22 108.2 105 49.5
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 7.2e-22 107.8 113 46.0
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 2.1e-21 106.3 114 51.8
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.1e-21 106.3 114 51.8
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.1e-21 106.3 114 51.8
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.7e-21 105.1 77 66.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 7.9e-21 104.4 114 50.9
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.3e-20 102.8 78 64.1
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 5.2e-20 101.7 115 40.0
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-19 99.8 94 54.3
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.4e-19 98.6 75 58.7
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 7.4e-19 97.8 100 45.0
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.8e-17 93.2 108 43.5
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.4e-17 92.8 70 65.7
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 7.0e-17 91.3 201 33.3
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 9.1e-17 90.9 111 40.5
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 2.0e-16 89.7 108 38.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.6e-16 89.4 118 46.6
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.9e-16 88.2 110 45.5
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 7.7e-16 87.8 80 53.8
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 7.7e-16 87.8 97 41.2
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-15 87.0 102 48.0
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.7e-15 86.7 110 40.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.7e-15 86.7 98 44.9
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.5e-14 83.6 89 52.8
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 3.2e-14 82.4 149 40.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 8.0e-13 77.8 74 55.4
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.0e-08 63.2 117 35.9
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 1.9e-06 56.6 123 30.9


User provided reference genes

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