Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.7e-109 399.4 209 100.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 4.4e-54 215.3 212 64.6
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.9e-49 199.9 245 57.1
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 7.3e-49 198.0 216 61.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 9.5e-49 197.6 210 60.5
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 9.5e-49 197.6 232 58.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.2e-48 197.2 194 62.9
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.2e-48 197.2 221 57.9
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.2e-48 197.2 220 59.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.1e-48 196.4 222 59.5
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 3.6e-48 195.7 230 59.6
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.2e-48 194.9 206 60.2
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 8.1e-48 194.5 221 58.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.4e-47 193.7 194 62.4
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.8e-47 193.4 222 57.7
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.8e-47 193.4 198 61.1
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.4e-47 193.0 229 56.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 3.1e-47 192.6 221 57.0
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.1e-47 192.6 228 57.0
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 8.9e-47 191.0 229 56.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.2e-46 190.7 227 54.6
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.5e-46 190.3 213 58.7
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.5e-46 190.3 213 58.7
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.4e-46 189.1 226 57.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.4e-46 189.1 236 56.4
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.4e-46 188.7 224 55.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.8e-46 188.3 213 58.2
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.7e-45 186.8 222 56.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.7e-45 186.8 216 58.3
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.9e-45 186.0 213 57.7
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.8e-45 185.7 214 57.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.4e-44 183.7 231 53.2
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.4e-44 183.0 247 52.2
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.2e-44 182.6 223 56.1
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 4.2e-44 182.2 236 58.1
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 4.2e-44 182.2 223 55.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 4.2e-44 182.2 200 58.5
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.4e-44 181.8 231 55.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 5.4e-44 181.8 217 57.6
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 5.4e-44 181.8 219 55.7
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.1e-44 181.4 238 55.9
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.1e-44 181.4 232 53.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 9.2e-44 181.0 205 56.1
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 9.2e-44 181.0 223 54.7
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.2e-43 180.6 220 53.6
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.2e-43 180.6 220 53.6
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.6e-43 180.3 234 52.6
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.6e-43 180.3 253 51.4
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.6e-43 180.3 201 57.7
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.7e-43 179.5 232 54.3
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 2.7e-43 179.5 218 56.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.5e-43 179.1 220 53.6
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 3.5e-43 179.1 226 53.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 4.6e-43 178.7 246 56.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.0e-43 178.3 223 55.2
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 7.8e-43 177.9 224 54.0
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 7.8e-43 177.9 193 58.5
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.3e-42 177.2 208 56.7
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.3e-42 177.2 196 55.6
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.3e-42 177.2 220 55.5
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.7e-42 176.8 224 56.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.7e-42 176.8 224 56.2
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.9e-42 175.6 203 55.7
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.9e-42 175.6 203 55.7
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.9e-42 175.6 221 53.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.9e-42 175.6 237 50.6
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 3.9e-42 175.6 219 55.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 6.6e-42 174.9 238 52.9
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 8.7e-42 174.5 199 60.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 8.7e-42 174.5 230 50.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.5e-41 173.7 199 55.8
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.9e-41 173.3 223 50.7
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.5e-41 172.9 215 56.3
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.5e-41 172.9 225 54.7
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 5.6e-41 171.8 193 58.5
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 7.3e-41 171.4 209 53.6
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.3e-40 170.6 212 56.1
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-40 170.6 232 51.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.3e-40 170.6 198 55.6
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.6e-40 170.2 223 49.8
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.6e-40 170.2 232 52.2
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 2.1e-40 169.9 227 53.3
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.1e-40 169.9 233 53.2
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-40 169.1 228 53.1
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 6.2e-40 168.3 234 53.0
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 5.3e-39 165.2 205 55.6
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 6.9e-39 164.9 233 52.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 6.9e-39 164.9 232 53.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 6.9e-39 164.9 198 57.6
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 6.9e-39 164.9 231 52.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.2e-38 164.1 263 46.8
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-38 164.1 232 53.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.4e-38 162.5 243 50.2
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.4e-38 162.2 239 51.5
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 4.4e-38 162.2 228 51.8
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.4e-38 162.2 193 56.0
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 7.6e-38 161.4 225 52.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 7.6e-38 161.4 240 51.2
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.9e-38 161.0 169 60.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 9.9e-38 161.0 236 50.4
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-37 160.2 225 51.6
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-37 160.2 225 52.0
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.7e-37 160.2 225 51.6
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.9e-37 158.7 227 52.0
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-36 157.5 225 52.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.4e-36 157.1 184 54.9
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-36 157.1 201 52.7
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.4e-36 157.1 201 52.7
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.9e-36 156.8 201 52.7
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.2e-36 155.6 230 50.0
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 5.4e-36 155.2 224 47.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.2e-35 154.1 232 46.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-35 154.1 228 49.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-35 154.1 229 50.2
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-35 154.1 228 49.6
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-35 153.7 220 51.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.3e-34 150.6 213 48.8
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.7e-34 150.2 232 47.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.7e-34 150.2 251 45.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.3e-34 149.8 223 48.4
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 3.0e-34 149.4 231 47.6
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 6.6e-34 148.3 225 50.2
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.6e-34 148.3 210 50.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 8.7e-34 147.9 213 47.4
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 8.7e-34 147.9 156 58.3
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.5e-33 147.1 245 49.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-33 147.1 229 48.9
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.5e-33 147.1 218 49.1
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.9e-33 146.7 190 53.2
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 3.3e-33 146.0 244 47.1
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.6e-32 143.7 213 46.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.6e-32 142.5 230 48.7
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 6.2e-32 141.7 224 49.6
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-31 141.0 205 49.8
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.4e-31 139.8 226 47.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 6.9e-31 138.3 209 49.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.0e-30 136.7 214 50.5
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.0e-30 136.7 189 52.4
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.6e-30 136.3 210 48.1
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.5e-30 135.6 232 47.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.6e-30 134.8 238 47.9
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.6e-30 134.8 205 44.4
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 9.9e-30 134.4 205 44.4
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.9e-29 132.1 185 49.7
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-28 128.6 205 47.3
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-27 127.5 205 47.3
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 7.9e-27 124.8 205 46.3
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 7.9e-27 124.8 205 46.3
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.1e-26 122.1 208 42.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 6.7e-26 121.7 205 44.4
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.3e-24 117.5 161 48.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.7e-24 115.9 143 54.5
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.5e-19 99.4 163 46.6
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.5e-19 99.4 96 64.6
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.3e-18 97.4 101 63.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 8.7e-18 94.7 156 42.9
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-16 90.9 235 40.4
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 4.8e-16 89.0 155 38.7
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.5e-14 84.0 110 49.1
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.3e-13 80.9 65 73.8
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.7e-13 80.5 168 42.9
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 8.4e-13 78.2 62 64.5


User provided reference genes

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