Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 7.0e-190 667.2 343 100.0
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.0e-160 569.3 346 85.8
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 3.4e-160 568.5 346 86.1
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 4.4e-160 568.2 346 85.5
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 1.4e-158 563.1 346 84.4
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 1.6e-157 559.7 345 83.5
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.7e-156 556.2 344 84.6
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 3.9e-156 555.1 345 82.0
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 6.6e-156 554.3 346 82.9
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 6.6e-156 554.3 343 81.9
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 6.6e-156 554.3 346 82.4
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 1.5e-155 553.1 346 82.4
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 2.5e-155 552.4 349 83.4
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 4.7e-154 548.1 345 83.5
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 2.3e-153 545.8 346 79.2
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.3e-153 545.8 346 79.2
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 6.8e-153 544.3 346 79.2
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 6.8e-153 544.3 343 81.3
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.2e-152 543.5 344 82.0
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 1.5e-152 543.1 349 79.7
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 2.6e-152 542.3 345 81.4
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 5.8e-152 541.2 344 81.7
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 5.8e-152 541.2 344 81.7
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 5.8e-152 541.2 355 79.4
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 2.4e-150 535.8 346 80.9
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 1.2e-149 533.5 345 80.3
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 4.6e-149 531.6 346 80.3
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 1.7e-148 529.6 346 77.7
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 8.6e-148 527.3 346 78.0
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 7.3e-147 524.2 345 78.3
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 9.5e-147 523.9 360 75.6
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.2e-146 523.5 391 70.3
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 2.8e-146 522.3 348 76.7
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 6.2e-146 521.2 361 74.0
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 5.2e-145 518.1 346 77.2
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 1.2e-144 516.9 346 76.0
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 2.0e-144 516.2 348 76.1
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 4.4e-144 515.0 346 76.9
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 8.4e-143 510.8 346 74.6
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 1.9e-142 509.6 348 75.6
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 7.1e-142 507.7 346 75.4
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 3.5e-141 505.4 309 81.6
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 3.5e-141 505.4 344 75.0
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 3.5e-141 505.4 345 76.2
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 3.5e-141 505.4 350 75.1
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.0e-140 503.8 344 74.7
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 3.9e-140 501.9 346 73.1
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 5.1e-140 501.5 308 81.5
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 8.7e-140 500.7 340 73.8
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 8.7e-140 500.7 340 73.8
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 4.3e-139 498.4 337 75.4
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.6e-138 496.5 386 71.8
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 2.1e-138 496.1 348 72.7
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 3.6e-138 495.4 340 72.6
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 4.7e-138 495.0 344 73.3
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 6.2e-138 494.6 340 72.6
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.1e-137 493.8 340 72.9
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 1.4e-137 493.4 344 73.0
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 3.1e-137 492.3 340 72.4
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 6.9e-137 491.1 336 74.1
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 6.9e-137 491.1 345 73.3
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 9.0e-137 490.7 337 73.3
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 1.5e-136 490.0 345 74.5
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 4.4e-136 488.4 345 74.5
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 4.3e-131 471.9 337 70.6
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 4.8e-130 468.4 296 81.1
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 2.4e-129 466.1 345 67.5
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 3.4e-128 462.2 345 66.7
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 2.1e-125 453.0 346 70.2
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 3.0e-124 449.1 337 69.7
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 5.1e-124 448.4 346 65.9
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 1.9e-123 446.4 345 65.5
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 2.6e-120 436.0 328 67.1
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 2.6e-120 436.0 365 65.5
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 2.2e-119 433.0 304 75.3
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.1e-118 430.6 304 74.7
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 1.3e-114 417.2 346 63.6
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 3.1e-113 412.5 307 69.1
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 3.1e-113 412.5 255 83.5
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 2.2e-111 406.4 397 58.4
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 2.5e-107 392.9 409 55.3
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 1.3e-106 390.6 363 59.5
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.8e-103 379.0 363 59.5
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 1.0e-100 370.9 339 61.4
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 2.2e-98 363.2 302 66.9
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 8.2e-98 361.3 374 57.0
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 9.4e-94 347.8 267 70.0
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 3.0e-92 342.8 350 52.0
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 2.8e-90 336.3 299 65.6
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 6.1e-85 318.5 326 48.5
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 5.3e-81 305.4 253 62.8
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 3.2e-78 296.2 184 82.6
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 3.1e-73 279.6 150 86.0
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 2.0e-72 276.9 173 83.2
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 3.5e-72 276.2 153 87.6
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 5.9e-72 275.4 151 88.7
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 8.5e-71 271.6 176 80.1
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.5e-70 270.8 176 79.0
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.1e-69 266.9 172 74.4
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 8.0e-69 265.0 181 78.5
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 2.8e-66 256.5 192 68.8
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 3.0e-60 236.5 226 56.2
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.5e-59 234.2 311 41.5
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.7e-55 220.7 175 66.9
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 1.5e-54 217.6 122 83.6
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 2.6e-51 206.8 120 83.3
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 9.2e-49 198.4 216 55.6
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 9.2e-49 198.4 108 88.0
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 1.3e-42 177.9 129 67.4
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 7.8e-40 168.7 99 85.9
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 8.6e-39 165.2 91 80.2
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 2.5e-38 163.7 91 76.9
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 5.6e-38 162.5 126 62.7
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 3.6e-37 159.8 93 79.6
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 2.3e-36 157.1 120 65.0
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 2.0e-35 154.1 100 72.0
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 3.5e-32 143.3 342 30.4
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-30 136.7 114 62.3
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 7.3e-30 135.6 104 65.4
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.0e-28 129.8 76 76.3
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 6.8e-28 129.0 83 79.5
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 8.9e-28 128.6 75 76.0
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 6.0e-24 115.9 121 45.5
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 1.1e-22 111.7 115 57.4
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.9e-22 110.9 80 71.2
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 7.3e-22 109.0 58 86.2
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.8e-21 106.3 75 70.7
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 2.6e-19 100.5 211 32.7
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 6.9e-12 75.9 332 25.0
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 1.5e-11 74.7 319 25.7
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 1.7e-10 71.2 320 25.6
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 2.9e-10 70.5 307 24.8
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 8.4e-10 68.9 316 26.3
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 1.4e-09 68.2 146 30.1
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 3.2e-09 67.0 266 25.2
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 4.2e-09 66.6 320 24.1
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 4.2e-09 66.6 316 24.4
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.2e-08 65.1 53 56.6
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.0e-07 62.0 243 26.3
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.0e-07 62.0 243 26.3
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 3.9e-07 60.1 243 25.5
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 5.1e-07 59.7 234 25.6
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 6.7e-07 59.3 249 25.7
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 2.5e-06 57.4 323 24.8


User provided reference genes

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