Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.5e-121 439.5 214 100.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.2e-84 315.5 208 70.7
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.2e-84 315.5 208 70.7
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 2.2e-80 302.8 208 69.2
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.3e-80 301.2 211 67.3
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.1e-79 298.5 211 66.4
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.5e-77 291.2 208 65.9
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.1e-74 281.6 208 63.9
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.6e-73 279.3 204 65.7
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.7e-72 276.6 210 62.9
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.7e-72 276.6 209 63.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.7e-72 276.6 209 62.2
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.2e-72 276.2 212 62.3
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.8e-72 275.8 208 63.5
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-71 273.5 209 62.2
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.8e-71 273.1 207 63.8
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.0e-71 271.2 208 61.5
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.2e-70 270.4 212 59.4
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.6e-70 269.2 211 62.6
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.6e-70 269.2 203 64.0
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.5e-70 268.5 210 62.4
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.5e-70 268.5 210 62.4
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.3e-69 266.9 207 62.3
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.2e-69 266.2 209 64.1
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 3.8e-69 265.4 209 63.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.0e-69 265.0 211 61.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.5e-69 264.2 206 61.7
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.1e-68 263.8 211 60.2
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.5e-68 263.5 212 60.4
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.9e-68 263.1 212 58.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.9e-68 263.1 206 62.1
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.5e-68 262.7 209 58.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.5e-68 262.7 212 58.5
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 3.2e-68 262.3 211 60.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 3.2e-68 262.3 209 58.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.6e-67 260.0 211 57.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.7e-67 259.2 208 59.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 2.7e-67 259.2 209 57.4
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 4.7e-67 258.5 216 59.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.7e-67 258.5 204 60.8
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 4.7e-67 258.5 208 59.6
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 6.1e-67 258.1 207 60.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 8.0e-67 257.7 208 58.7
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 8.0e-67 257.7 206 58.7
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.0e-66 257.3 212 58.5
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.0e-66 257.3 212 58.5
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.0e-66 257.3 209 56.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.1e-65 253.8 208 59.1
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.7e-65 251.5 208 59.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 7.5e-65 251.1 213 55.9
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.3e-64 250.4 209 58.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 2.2e-64 249.6 207 61.4
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.3e-64 248.1 206 55.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 8.2e-64 247.7 210 54.3
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.1e-63 247.3 206 56.8
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.1e-63 247.3 202 58.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.1e-63 247.3 201 61.2
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.4e-63 246.1 206 56.8
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.4e-63 246.1 209 56.9
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.4e-63 246.1 208 56.7
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 3.1e-63 245.7 187 63.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.3e-63 245.0 207 60.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 7.0e-63 244.6 206 55.3
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 7.0e-63 244.6 205 57.1
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 9.1e-63 244.2 208 57.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.0e-62 243.0 206 55.3
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 3.5e-62 242.3 209 56.9
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.9e-62 241.5 207 58.9
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 7.7e-62 241.1 202 57.4
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.0e-61 240.7 204 56.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 2.9e-61 239.2 203 58.6
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.8e-61 238.8 202 57.9
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.8e-61 238.8 211 53.6
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.0e-61 238.4 204 56.9
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 6.5e-61 238.0 208 53.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 6.5e-61 238.0 210 54.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 6.5e-61 238.0 204 55.9
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 6.5e-61 238.0 214 55.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 8.5e-61 237.7 206 53.9
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.1e-60 237.3 201 57.7
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.5e-60 236.1 201 56.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 3.2e-60 235.7 207 57.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 5.5e-60 235.0 208 52.9
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 9.4e-60 234.2 229 53.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.2e-59 233.8 212 54.2
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.1e-59 233.0 206 54.4
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 3.6e-59 232.3 206 54.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.1e-59 231.5 210 53.8
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.3e-58 229.6 201 54.7
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 6.8e-58 228.0 211 53.6
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 8.8e-58 227.6 202 55.4
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-57 227.3 212 52.4
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.5e-57 226.9 210 52.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-57 226.5 210 52.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-57 226.5 210 52.4
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.0e-57 226.5 213 50.7
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 4.4e-57 225.3 210 51.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 4.4e-57 225.3 210 51.9
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.4e-57 225.3 182 60.4
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.4e-57 225.3 209 54.1
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 5.7e-57 224.9 201 54.7
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 5.7e-57 224.9 207 51.7
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.7e-57 224.9 209 54.1
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.5e-57 224.6 208 53.8
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-56 223.4 210 51.9
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 3.7e-56 222.2 208 52.4
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 3.7e-56 222.2 209 53.6
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 6.3e-56 221.5 206 51.9
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.1e-55 220.7 210 51.0
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-55 220.7 168 62.5
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.8e-55 219.9 210 50.5
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 7.0e-55 218.0 206 51.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.6e-54 216.9 209 52.6
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-53 214.2 210 51.4
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.0e-53 214.2 209 51.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.0e-53 214.2 209 50.2
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.2e-53 213.0 209 50.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.9e-53 212.6 209 50.2
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 5.0e-53 211.8 209 50.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-52 210.3 212 49.1
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-52 209.9 212 49.1
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 3.2e-52 209.1 210 50.0
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 3.2e-52 209.1 140 72.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 3.2e-52 209.1 211 50.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.5e-52 208.4 207 51.7
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 5.5e-52 208.4 209 49.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 7.2e-52 208.0 209 49.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 7.2e-52 208.0 210 49.5
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 9.4e-52 207.6 209 49.8
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-51 206.8 212 48.1
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.6e-51 206.8 212 48.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.6e-51 205.7 240 45.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 6.1e-51 204.9 210 49.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 6.1e-51 204.9 210 49.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 8.0e-51 204.5 209 48.3
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.5e-49 200.3 209 50.7
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 4.4e-49 198.7 217 53.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.2e-48 196.4 228 46.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-47 193.7 229 45.4
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.5e-46 188.7 166 55.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.3e-45 187.2 213 46.0
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.3e-45 186.4 217 45.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 5.6e-44 181.8 208 43.8
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 5.6e-44 181.8 199 47.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.6e-43 180.3 143 62.2
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 4.6e-38 162.2 101 75.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 7.8e-38 161.4 209 42.1
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.6e-37 158.3 169 47.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.6e-36 155.2 144 52.8
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.2e-35 154.1 205 42.9
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.6e-35 152.5 100 69.0
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 8.3e-32 141.4 101 69.3
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.8e-30 134.8 135 51.1
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.7e-29 133.7 98 64.3
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 3.9e-29 132.5 100 62.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.9e-29 132.5 166 42.8
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.1e-28 131.0 96 61.5
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.5e-28 129.8 130 50.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 7.3e-28 128.3 141 49.6
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 3.2e-23 112.8 163 37.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.0e-21 107.8 116 46.6
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 6.6e-21 105.1 203 32.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-20 102.8 130 44.6
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.3e-20 102.4 130 44.6
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.8e-19 99.8 69 68.1
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 6.2e-19 98.6 76 56.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 8.9e-18 94.7 84 51.2
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.4e-17 92.8 97 42.3
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 7.6e-17 91.7 121 43.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 9.9e-17 91.3 145 36.6
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.2e-16 90.1 101 48.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.4e-15 87.4 85 47.1
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 9.2e-15 84.7 60 58.3
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-14 83.2 92 46.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.3e-12 75.1 82 46.3
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.7e-11 72.4 63 52.4
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 8.9e-10 68.2 63 47.6
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 6.0e-06 55.5 38 63.2


User provided reference genes

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