Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A17T58 Lonicera japonica HOM05D027493 ORTHO05D028430 1.9e-93 346.3 233 100.0
Actinidia37949 Actinidia chinensis HOM05D000424 ORTHO05D000355 2.0e-26 123.6 266 33.8
GSVIVG01008742001 Vitis vinifera HOM05D000424 ORTHO05D000355 3.3e-26 122.9 152 50.7
Dinv43544 Davidia involucrata HOM05D000424 ORTHO05D000355 7.2e-21 105.1 60 83.3
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 2.3e-19 100.1 60 80.0
FvH4_2g37970 Fragaria vesca HOM05D000424 ORTHO05D000355 6.7e-19 98.6 59 76.3
Potri.005G245400 Populus trichocarpa HOM05D000424 ORTHO05D000355 8.8e-19 98.2 60 75.0
TAR376G0085 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.5e-18 97.4 60 76.7
DCAR_030106 Daucus carota HOM05D000424 ORTHO05D000355 2.0e-18 97.1 60 78.3
DCAR_030127 Daucus carota HOM05D000424 ORTHO05D000355 2.0e-18 97.1 60 78.3
Sabra05G0189600 Salix brachista HOM05D000424 ORTHO05D000355 2.0e-18 97.1 60 75.0
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 7.4e-18 95.1 60 71.7
FAN20G0922 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.3e-17 94.4 59 72.9
FAN27G1492 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.3e-17 94.4 59 72.9
RcHm_v2.0_Chr6g0303651 Rosa chinensis HOM05D000424 ORTHO05D000355 1.3e-17 94.4 59 72.9
vmacro17156 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 1.3e-17 94.4 60 75.0
Hma1.2p1_1598F.1_g292930 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.2e-17 93.6 56 78.6
Rhsim07G0248500 Rhododendron simsii HOM05D000424 ORTHO05D000355 2.8e-17 93.2 59 72.9
FAN15G0476 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.7e-17 92.8 59 71.2
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 4.8e-17 92.4 60 75.0
PGR083G2387 Punica granatum HOM05D000424 ORTHO05D000355 4.8e-17 92.4 60 73.3
CANSAT01G3161 Cannabis sativa HOM05D000424 ORTHO05D000355 1.1e-16 91.3 60 71.7
Manes.04G002700 Manihot esculenta HOM05D000424 ORTHO05D000355 1.1e-16 91.3 60 75.0
CSS0033496 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.4e-16 90.9 60 73.3
ECA238G3774 Erigeron canadensis HOM05D000424 ORTHO05D000355 2.4e-16 90.1 60 73.3
QL02p012919 Quercus lobata HOM05D000424 ORTHO05D000355 2.4e-16 90.1 59 71.2
CiPaw.07G143800 Carya illinoinensis HOM05D000424 ORTHO05D000355 3.1e-16 89.7 60 71.7
DCAR_030120 Daucus carota HOM05D000424 ORTHO05D000355 3.1e-16 89.7 50 86.0
Prupe.1G359600 Prunus persica HOM05D000424 ORTHO05D000355 7.0e-16 88.6 59 69.5
CAN.G311.72 Capsicum annuum HOM05D000424 ORTHO05D000355 9.1e-16 88.2 60 66.7
Ciclev10000789m.g Citrus clementina HOM05D000424 ORTHO05D000355 9.1e-16 88.2 60 68.3
Peaxi162Scf00174g00073 Petunia axillaris HOM05D000424 ORTHO05D000355 9.1e-16 88.2 60 66.7
Sopen04g035590 Solanum pennellii HOM05D000424 ORTHO05D000355 9.1e-16 88.2 60 66.7
PGSC0003DMG400009885 Solanum tuberosum HOM05D000424 ORTHO05D000355 9.1e-16 88.2 60 66.7
Atru.BG.232.p Acer truncatum HOM05D000424 ORTHO05D000355 1.2e-15 87.8 58 67.2
HanXRQChr06g0185091 Helianthus annuus HOM05D000424 ORTHO05D000355 1.2e-15 87.8 59 71.2
Lj4C17T15 Lonicera japonica HOM05D000424 ORTHO05D000355 1.2e-15 87.8 52 84.6
COL.COLO4_26085 Corchorus olitorius HOM05D000424 ORTHO05D000355 2.0e-15 87.0 60 66.7
Solyc04g081950.4 Solanum lycopersicum HOM05D000424 ORTHO05D000355 2.0e-15 87.0 60 65.0
CARHR020780 Cardamine hirsuta HOM05D000424 ORTHO05D000355 3.5e-15 86.3 59 69.5
Cfa014006 Carpinus fangiana HOM05D000424 ORTHO05D000355 3.5e-15 86.3 58 72.4
Haze_22701 Corylus avellana HOM05D000424 ORTHO05D000355 3.5e-15 86.3 58 72.4
Thecc.08G051600 Theobroma cacao HOM05D000424 ORTHO05D000355 3.5e-15 86.3 60 68.3
Actinidia29766 Actinidia chinensis HOM05D000424 ORTHO05D000355 5.9e-15 85.5 60 66.7
CDE06G0674 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 5.9e-15 85.5 60 66.7
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 1.0e-14 84.7 60 63.3
Cc09_g06050 Coffea canephora HOM05D000424 ORTHO05D000355 1.0e-14 84.7 60 68.3
AL1G33130 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 1.3e-14 84.3 60 65.0
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.7e-14 84.0 60 65.0
Thhalv10007329m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.7e-14 84.0 60 66.7
Sc26g0004470 Simmondsia chinensis HOM05D000424 ORTHO05D000355 2.2e-14 83.6 60 68.3
Cpa.g.sc26.266 Carica papaya HOM05D000424 ORTHO05D000355 5.0e-14 82.4 60 65.0
CsaV3_3G046110 Cucumis sativus L. HOM05D000424 ORTHO05D000355 5.0e-14 82.4 60 61.7
Oeu014026.1 Olea europaea HOM05D000424 ORTHO05D000355 7.2e-13 78.6 60 65.0
THA.LOC104809641 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 1.2e-12 77.8 60 60.0
arahy.Tifrunner.gnm1.ann1.DMCY37 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.8e-11 73.9 60 61.7
Potri.005G245500 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.8e-11 73.9 57 63.2
Psat5g012240 Pisum sativum HOM05D000424 ORTHO05D000355 2.3e-11 73.6 55 61.8
Ah.00g000680 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.0e-11 73.2 60 61.7
EL10Ac1g01607 Beta vulgaris HOM05D000424 ORTHO05D000355 1.5e-10 70.9 55 61.8
BcaB07g32035 Brassica carinata HOM05D000424 ORTHO05D000355 1.5e-10 70.9 151 66.2
Os09g0542800 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 2.0e-10 70.5 162 54.3
TWI12G1155 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.3e-10 69.7 51 64.7
Zm00001eb103960 Zea mays HOM05D000424 ORTHO05D000355 1.7e-09 67.4 162 56.2
AUR62013885 Chenopodium quinoa HOM05D000424 ORTHO05D000355 2.2e-09 67.0 60 55.0
Lalb_Chr23g0266001 Lupinus albus HOM05D000424 ORTHO05D000355 2.2e-09 67.0 60 56.7
Gohir.A05G183000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 2.8e-09 66.6 47 70.2
Gorai.009G191300 Gossypium raimondii HOM05D000424 ORTHO05D000355 2.8e-09 66.6 47 70.2
Duzib093G0301 Durio zibethinus HOM05D000424 ORTHO05D000355 4.8e-09 65.9 47 68.1
Lj4C17G7 Lonicera japonica HOM05D027493 ORTHO05D028430 4.8e-09 65.9 40 77.5
Manes.05G142800 Manihot esculenta HOM05D000424 ORTHO05D000355 4.8e-09 65.9 49 65.3
Medtr3g114700 Medicago truncatula HOM05D000424 ORTHO05D000355 6.3e-09 65.5 56 53.6
SalBow7G3167 Salvia bowleyana HOM05D000424 ORTHO05D000355 6.3e-09 65.5 48 64.6
AUR62036712 Chenopodium quinoa HOM05D000424 ORTHO05D000355 8.2e-09 65.1 60 53.3
Migut.C00898 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.4e-08 64.3 47 66.0
PSO541G5032 Papaver somniferum HOM05D000424 ORTHO05D000355 1.8e-08 63.9 53 56.6
Sed0024891 Sechium edule HOM05D000424 ORTHO05D000355 1.8e-08 63.9 45 68.9
Ca_15467_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 5.3e-08 62.4 47 63.8
CDE04G1573 Ceratophyllum demersum HOM05D027493 ORTHO05D028430 1.2e-07 61.2 133 31.6
BraA06t24742Z Brassica rapa HOM05D000424 ORTHO05D000355 2.7e-07 60.1 47 63.8
ClCG05G015430 Citrullus lanatus HOM05D000424 ORTHO05D000355 4.5e-07 59.3 44 65.9
Carub.0001s1980 Capsella rubella HOM05D027493 ORTHO05D028430 7.7e-07 58.5 47 61.7
Nitab4.5_0003030g0120 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.0e-06 58.2 47 57.4
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 1.7e-06 57.4 47 61.7
Sp1g18030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.7e-06 57.4 47 61.7
AT1G20300 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.2e-06 57.0 47 59.6
A06p16380 Brassica napus HOM05D000424 ORTHO05D000355 2.2e-06 57.0 47 61.7
BolC5t30587H Brassica oleracea HOM05D000424 ORTHO05D000355 2.2e-06 57.0 47 61.7
BcaC05g25930 Brassica carinata HOM05D000424 ORTHO05D000355 2.9e-06 56.6 46 60.9
C05p18820 Brassica napus HOM05D000424 ORTHO05D000355 2.9e-06 56.6 46 60.9
MD17G1208400 Malus domestica HOM05D000891 ORTHO05D000761 5.0e-06 55.8 116 27.6
PSO541G2673 Papaver somniferum HOM05D000424 ORTHO05D000355 6.5e-06 55.5 47 57.4
Phvul.009G019800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 6.5e-06 55.5 47 59.6
SGA_v2.0_scaffold292G47396 Striga asiatica HOM05D000424 ORTHO05D000355 6.5e-06 55.5 45 60.0
TWI36G0926 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 8.5e-06 55.1 47 59.6


User provided reference genes

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