Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.6e-258 895.6 443 100.0
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.0e-148 530.8 442 63.8
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.5e-144 516.9 442 61.1
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.0e-141 506.5 442 60.0
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 5.9e-141 505.0 442 61.1
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.7e-140 503.4 442 60.9
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 9.8e-136 487.6 442 59.0
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 6.3e-135 485.0 442 57.9
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.2e-133 480.7 443 58.9
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.0e-133 479.9 442 57.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.5e-133 478.8 444 57.9
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.0e-132 475.3 442 57.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 5.0e-132 475.3 437 57.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.5e-131 473.0 442 56.8
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 5.6e-131 471.9 442 58.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 6.1e-130 468.4 442 56.8
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.8e-129 466.8 442 55.9
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 4.0e-129 465.7 442 56.6
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 6.8e-129 464.9 499 53.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 3.4e-128 462.6 442 58.6
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 4.4e-128 462.2 442 57.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.3e-127 460.7 444 57.2
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.3e-127 460.7 442 56.6
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.2e-127 459.9 444 57.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 3.7e-127 459.1 442 56.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.7e-127 459.1 442 54.5
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 8.3e-127 458.0 442 55.2
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.9e-126 456.8 442 53.8
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.9e-126 456.8 442 56.1
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.4e-126 456.4 442 55.4
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 9.2e-126 454.5 442 56.6
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.6e-125 453.8 521 49.5
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.0e-125 453.4 442 56.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 2.0e-125 453.4 442 56.1
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 7.8e-125 451.4 442 55.4
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 1.0e-124 451.1 442 54.8
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.0e-124 451.1 443 55.3
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-124 450.7 442 55.7
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-124 450.3 442 55.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 3.0e-124 449.5 442 55.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 3.9e-124 449.1 442 54.3
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 8.6e-124 448.0 442 54.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.1e-123 447.6 442 54.5
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.5e-123 447.2 442 54.8
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.5e-123 446.4 443 55.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 3.3e-123 446.0 442 55.0
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.3e-123 445.7 442 54.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 7.3e-123 444.9 415 57.1
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.6e-122 443.7 442 52.5
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.6e-122 443.7 442 53.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.1e-122 443.4 442 55.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.2e-122 441.8 442 54.3
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.1e-121 441.0 442 53.8
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.1e-121 441.0 442 54.1
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 4.0e-121 439.1 442 54.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 6.8e-121 438.3 358 62.8
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.0e-120 436.8 442 55.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 2.6e-120 436.4 445 55.1
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 4.4e-120 435.6 445 54.8
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 5.8e-120 435.3 445 54.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 7.5e-120 434.9 442 52.9
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 9.8e-120 434.5 442 54.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.3e-119 434.1 444 53.6
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 6.4e-119 431.8 445 55.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 8.3e-119 431.4 415 55.9
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.1e-118 431.0 443 53.5
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.1e-118 431.0 436 52.8
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 5.4e-118 428.7 445 54.4
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.1e-117 426.8 443 52.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.6e-117 425.6 439 54.4
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 4.6e-117 425.6 497 49.9
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 7.8e-117 424.9 442 51.6
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.0e-116 424.5 445 54.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 5.1e-116 422.2 442 51.8
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.6e-116 421.4 439 53.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.1e-115 421.0 442 53.4
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.9e-115 420.2 443 52.1
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.5e-115 419.9 443 53.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 2.5e-115 419.9 443 52.6
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 4.3e-115 419.1 443 52.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.2e-112 411.0 493 49.9
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 4.4e-112 409.1 442 50.7
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.2e-111 406.8 443 52.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.2e-111 406.8 442 52.3
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 3.7e-111 406.0 443 50.3
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.7e-111 406.0 443 49.7
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 9.9e-104 381.3 324 61.7
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.3e-99 366.3 324 58.3
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 7.3e-99 365.2 334 58.7
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 2.8e-98 363.2 416 47.8
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.4e-97 360.1 324 57.1
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.4e-96 356.3 318 59.1
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.9e-87 326.6 442 44.3
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.5e-83 313.5 294 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.0e-76 290.0 457 38.7
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 8.7e-76 288.5 193 74.1
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.8e-74 283.5 272 54.8
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.4e-73 280.4 453 39.1
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.5e-72 277.7 291 49.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 6.1e-69 265.8 451 37.3
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.8e-68 264.2 249 56.2
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 8.2e-66 255.4 404 37.6
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.1e-61 240.7 234 55.6
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 4.6e-61 239.6 229 55.9
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 7.2e-54 215.7 527 30.9
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 9.7e-51 205.3 317 37.9
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 3.0e-44 183.7 140 66.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-30 138.7 171 45.6
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.2e-30 136.7 104 62.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 4.4e-27 126.7 142 49.3
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 4.1e-25 120.2 111 52.3
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.2e-24 118.6 361 25.2
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-19 101.7 75 65.3
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-19 101.3 71 69.0
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-18 98.6 132 44.7
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-18 97.4 286 30.4
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.8e-17 94.7 131 42.0
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 3.5e-16 90.5 128 41.4
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.0e-15 89.0 73 58.9
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-14 85.1 56 71.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.5e-14 82.4 93 50.5
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-13 80.9 93 49.5
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-13 80.9 93 49.5
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-13 80.9 93 49.5
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.0e-13 79.3 93 48.4
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-12 78.6 93 48.4
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.1e-12 77.4 63 61.9
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.2e-11 75.5 244 25.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.8e-11 73.2 58 58.6
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-10 72.0 57 59.6
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.9e-10 70.9 58 58.6
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.7e-10 70.5 58 56.9
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 4.9e-10 70.1 48 66.7
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 6.4e-10 69.7 112 39.3
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.0e-09 66.2 47 66.0
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 2.7e-08 64.3 117 34.2
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.9e-07 60.5 65 44.6


User provided reference genes

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