Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 5.6e-150 534.3 270 100.0
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.4e-106 387.5 276 74.6
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 2.5e-102 375.9 280 72.5
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.3e-102 375.2 276 74.3
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 5.6e-102 374.8 274 73.7
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 1.3e-101 373.6 275 74.2
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 6.2e-101 371.3 276 73.6
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 8.1e-101 370.9 274 72.6
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.4e-100 370.2 277 72.6
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 2.4e-100 369.4 276 72.8
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.1e-100 369.0 276 73.2
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 3.1e-100 369.0 276 73.2
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 4.0e-100 368.6 276 72.8
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.2e-99 367.1 280 71.8
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 1.2e-99 367.1 282 73.4
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 2.0e-99 366.3 272 73.5
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 2.6e-99 365.9 283 69.3
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.5e-99 365.2 278 71.9
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 5.8e-99 364.8 274 71.2
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 7.6e-99 364.4 275 71.6
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.7e-98 363.2 275 73.1
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 2.2e-98 362.8 272 72.4
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 2.2e-98 362.8 274 73.4
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 4.9e-98 361.7 272 71.7
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 4.9e-98 361.7 275 71.6
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 6.5e-98 361.3 276 70.3
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 8.4e-98 360.9 272 72.4
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 4.2e-97 358.6 280 70.0
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.5e-97 358.2 275 72.4
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 9.3e-97 357.5 279 69.5
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 1.2e-96 357.1 279 71.0
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.2e-96 357.1 280 69.3
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.6e-96 356.7 272 70.6
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 2.1e-96 356.3 276 70.7
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 2.7e-96 355.9 279 70.6
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 4.6e-96 355.1 273 70.7
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 7.9e-96 354.4 276 71.0
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 7.9e-96 354.4 273 71.1
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.3e-95 353.6 272 70.6
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.3e-95 353.6 273 70.7
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 2.3e-95 352.8 273 70.7
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 3.0e-95 352.4 280 68.9
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 6.7e-95 351.3 279 69.5
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 8.7e-95 350.9 269 70.6
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 1.1e-94 350.5 279 68.5
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.1e-94 350.5 272 70.2
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.5e-94 350.1 279 67.4
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 1.9e-94 349.7 279 67.4
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.9e-94 349.7 280 68.6
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.5e-94 349.4 295 66.4
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 3.3e-94 349.0 298 64.1
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 3.3e-94 349.0 279 67.7
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 3.3e-94 349.0 275 69.8
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 4.3e-94 348.6 277 69.3
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 7.4e-94 347.8 294 66.7
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.3e-93 347.1 279 67.7
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 1.6e-93 346.7 277 67.5
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.6e-93 346.7 295 66.1
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 2.1e-93 346.3 280 66.8
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 2.1e-93 346.3 276 69.2
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 4.8e-93 345.1 274 67.9
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 8.2e-93 344.4 287 67.2
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 4.1e-92 342.0 272 68.8
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 9.0e-92 340.9 295 65.4
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 7.6e-91 337.8 279 66.3
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 1.3e-90 337.0 280 67.1
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 3.8e-90 335.5 279 67.4
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 5.0e-90 335.1 275 67.6
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 5.0e-90 335.1 276 65.2
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 1.4e-89 333.6 281 65.8
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 4.2e-89 332.0 277 67.1
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 2.1e-88 329.7 277 67.1
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 2.7e-88 329.3 294 65.3
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.0e-87 327.4 275 66.9
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.0e-87 327.4 274 62.8
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.3e-87 327.0 273 66.3
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 1.5e-86 323.6 309 60.5
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 3.3e-86 322.4 281 64.1
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 3.3e-86 322.4 278 65.1
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 9.7e-86 320.9 273 65.2
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 9.7e-86 320.9 272 66.5
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 2.2e-85 319.7 276 65.2
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.8e-85 319.3 273 64.5
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 8.2e-85 317.8 275 64.4
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 1.8e-84 316.6 283 62.9
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 1.8e-84 316.6 283 62.9
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 1.8e-84 316.6 283 62.9
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 3.1e-84 315.8 276 66.7
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 6.9e-84 314.7 286 62.2
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 9.0e-84 314.3 286 62.2
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 1.5e-83 313.5 280 62.1
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.5e-83 313.5 281 63.0
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 2.0e-83 313.2 249 71.1
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 3.4e-83 312.4 278 61.2
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 4.5e-83 312.0 280 61.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 7.7e-83 311.2 280 62.1
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 7.7e-83 311.2 280 62.5
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 1.7e-82 310.1 280 62.1
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 1.7e-82 310.1 280 61.8
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 1.7e-82 310.1 280 61.8
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.7e-82 310.1 287 61.0
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 2.2e-82 309.7 280 61.4
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 2.2e-82 309.7 280 62.1
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 5.0e-82 308.5 279 61.6
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 8.5e-82 307.8 280 61.4
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.5e-82 307.8 207 79.2
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 3.2e-81 305.8 267 64.8
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 1.2e-80 303.9 287 59.9
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.6e-80 302.4 277 63.5
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 4.6e-80 302.0 277 61.7
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 6.1e-80 301.6 302 57.6
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.0e-79 300.8 276 61.6
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 2.3e-79 299.7 228 72.8
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 2.0e-78 296.6 305 55.7
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 2.0e-78 296.6 221 70.6
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 1.7e-77 293.5 264 59.8
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 1.7e-77 293.5 249 65.1
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 1.1e-76 290.8 295 57.3
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 1.4e-76 290.4 207 77.8
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 4.1e-76 288.9 300 57.0
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 1.2e-75 287.3 280 58.2
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 2.1e-72 276.6 291 57.4
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 4.7e-72 275.4 272 56.6
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 1.5e-70 270.4 215 70.2
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 3.3e-70 269.2 266 59.8
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.3e-69 267.3 279 53.0
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 2.8e-69 266.2 212 68.4
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 6.3e-61 238.4 170 78.8
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 1.0e-58 231.1 272 47.4
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.7e-58 230.3 180 71.7
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 6.5e-58 228.4 273 47.6
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 3.2e-57 226.1 265 47.9
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 1.4e-55 220.7 227 54.6
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 4.2e-49 199.1 189 62.4
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 3.6e-48 196.1 178 65.2
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 3.1e-44 183.0 280 39.6
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 5.0e-42 175.6 137 66.4
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 4.4e-38 162.5 137 61.3
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.3e-26 124.4 91 79.1
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.1e-25 121.3 259 31.7
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.5e-25 120.2 262 30.5
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 2.0e-22 110.5 107 52.3
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 1.2e-11 74.7 262 27.5
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 2.3e-10 70.5 188 27.1
Cre17.g702750 Chlamydomonas reinhardtii HOM05D003236 ORTHO05D003620 1.1e-07 61.6 183 26.8
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 4.0e-07 59.7 180 28.9
MSTRG.23328 Avicennia marina HOM05D002673 ORTHO05D002766 6.8e-07 58.9 191 28.3
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 6.8e-07 58.9 180 28.3
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.9e-07 58.5 43 55.8
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 3.4e-06 56.6 182 28.6
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 4.4e-06 56.2 183 27.9
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 5.8e-06 55.8 180 27.8
RcHm_v2.0_Chr2g0115641 Rosa chinensis HOM05D002673 ORTHO05D002766 7.6e-06 55.5 174 28.7
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 9.9e-06 55.1 182 28.6


User provided reference genes

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