Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.9e-171 605.9 347 100.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.2e-141 506.9 347 76.7
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 7.4e-139 497.7 349 74.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-138 496.5 347 81.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.8e-138 495.7 348 75.6
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.7e-138 495.4 347 74.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.7e-138 495.4 348 79.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.1e-137 491.9 348 73.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 5.9e-136 488.0 348 80.7
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.0e-135 485.0 346 76.9
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.5e-135 484.6 347 75.2
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.5e-135 484.2 347 70.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.5e-135 484.2 349 71.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-134 483.4 346 71.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.9e-134 483.0 343 69.4
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.9e-134 483.0 346 78.3
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.5e-134 482.6 348 69.5
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.2e-134 481.9 348 73.0
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 5.5e-134 481.5 348 68.7
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.2e-134 481.1 347 79.8
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 7.2e-134 481.1 348 73.3
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.2e-134 481.1 349 73.9
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.2e-134 481.1 343 68.5
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 7.2e-134 481.1 344 81.4
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.7e-133 479.2 347 74.1
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.6e-133 478.8 346 71.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.6e-133 478.8 347 74.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.6e-133 478.8 348 67.8
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 4.7e-133 478.4 348 71.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.9e-133 477.6 348 70.1
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.4e-132 476.9 348 73.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-132 475.7 347 78.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 3.9e-132 475.3 348 73.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-132 475.3 359 66.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.9e-132 475.3 345 71.3
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.0e-131 473.0 348 74.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.3e-131 472.2 343 76.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 5.7e-131 471.5 346 72.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 5.7e-131 471.5 346 70.5
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 7.4e-131 471.1 348 69.0
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.3e-130 470.3 348 70.1
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-130 469.9 348 69.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.7e-130 469.9 348 68.7
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.2e-130 469.5 348 71.8
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.2e-130 469.5 348 67.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.8e-130 469.2 348 76.4
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 3.7e-130 468.8 345 70.7
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.7e-130 468.8 345 70.1
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 6.3e-130 468.0 343 73.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.3e-130 468.0 348 75.3
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.3e-130 468.0 348 75.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.3e-130 468.0 346 74.0
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.1e-129 467.2 349 76.8
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.1e-129 467.2 346 67.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.1e-129 465.3 345 69.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.0e-128 463.0 346 74.3
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.5e-128 462.2 348 67.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.5e-128 462.2 347 75.8
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.5e-128 462.2 345 73.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.0e-127 460.7 347 74.4
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.3e-127 460.3 349 70.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.7e-127 459.9 348 77.6
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.2e-127 459.5 373 63.3
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.8e-127 458.8 343 71.4
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 5.0e-127 458.4 349 74.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.5e-127 458.0 347 64.6
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-126 456.8 347 70.9
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.5e-126 456.1 344 64.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.5e-126 456.1 348 79.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.2e-126 455.3 351 67.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 5.5e-126 454.9 346 68.2
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 7.2e-126 454.5 349 66.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 7.2e-126 454.5 349 74.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-125 453.8 347 70.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 6.1e-125 451.4 347 65.4
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 8.0e-125 451.1 348 74.7
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.0e-124 450.7 348 76.4
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 3.0e-124 449.1 348 64.7
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.9e-124 448.7 343 68.2
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.9e-124 448.7 348 66.7
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.2e-124 448.4 343 68.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.7e-124 448.0 347 66.9
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.5e-123 446.8 347 74.6
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.4e-123 445.3 347 74.6
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.7e-123 444.9 350 69.7
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.7e-122 442.2 352 73.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.1e-121 438.7 347 65.1
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 4.1e-121 438.7 347 67.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 7.0e-121 438.0 348 68.4
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.0e-120 436.4 346 67.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.8e-119 432.2 344 68.3
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.9e-118 429.9 348 69.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.2e-118 429.1 364 67.0
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.1e-117 426.4 343 73.5
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 4.7e-117 425.2 326 64.1
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.0e-117 424.5 342 59.9
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.8e-116 423.3 348 67.8
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 4.0e-116 422.2 352 59.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.0e-115 419.9 348 68.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 7.5e-115 417.9 344 67.7
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.5e-115 417.9 348 69.3
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.7e-114 416.8 343 66.2
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.7e-114 416.8 344 66.3
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.7e-114 416.8 344 61.3
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.7e-114 415.6 448 52.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 8.3e-114 414.5 343 61.5
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.3e-114 414.5 306 77.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.1e-113 414.1 347 63.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.1e-113 412.1 350 66.3
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 5.3e-113 411.8 343 67.1
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 9.1e-113 411.0 343 64.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.7e-112 409.5 348 63.8
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.3e-111 407.1 343 61.8
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.9e-111 406.0 344 65.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 3.8e-111 405.6 343 60.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.9e-110 403.3 309 67.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.2e-109 400.6 343 62.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.6e-109 400.2 346 57.2
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.1e-109 398.3 351 63.0
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.0e-109 397.9 346 61.3
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.0e-108 396.0 234 82.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.4e-107 392.1 431 59.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-106 390.6 351 54.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-106 390.2 294 72.1
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 6.3e-106 388.3 349 55.9
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.3e-106 388.3 346 54.9
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.4e-105 386.3 343 62.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.1e-105 385.6 346 55.2
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.7e-104 382.9 339 64.3
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 4.5e-104 382.1 346 64.5
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.3e-103 379.8 349 54.7
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.8e-101 372.9 359 63.2
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-100 370.5 303 64.7
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 4.9e-98 362.1 295 68.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.6e-96 357.1 299 76.6
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 7.5e-91 338.2 297 59.9
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 7.3e-86 321.6 293 57.3
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.3e-84 316.6 246 70.7
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.5e-83 311.6 348 48.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.9e-82 309.7 279 67.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.4e-81 307.4 248 71.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-80 303.9 348 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.6e-80 302.4 353 43.3
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 5.1e-79 298.9 244 68.0
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 3.3e-78 296.2 286 55.2
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 4.3e-78 295.8 187 81.3
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 7.3e-78 295.0 286 54.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-77 293.9 218 70.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 8.1e-77 291.6 226 68.6
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.9e-74 283.1 347 40.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.1e-73 278.5 246 58.1
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.6e-72 275.8 340 47.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.1e-69 266.9 229 55.9
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.4e-68 263.5 338 40.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 9.9e-67 258.1 229 55.0
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.3e-66 257.7 241 56.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 3.5e-64 249.6 241 61.8
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.5e-62 243.4 241 54.4
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 9.6e-62 241.5 145 80.0
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 8.1e-61 238.4 229 53.3
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.6e-59 231.9 231 48.1
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.9e-55 219.5 130 80.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-48 196.8 120 80.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 5.8e-43 179.1 102 82.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.5e-40 169.9 131 70.2
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-37 161.4 128 68.0
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.3e-37 161.4 148 63.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 7.1e-33 145.6 75 86.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.8e-29 132.9 74 78.4
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.6e-24 116.3 348 27.0
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.1e-20 105.1 54 77.8
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.4e-19 100.1 149 33.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-19 100.1 54 85.2
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 2.5e-09 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.7e-08 63.9 174 30.5
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 4.0e-07 60.1 64 39.1
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 5.2e-07 59.7 103 38.8


User provided reference genes

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