Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 0.0e+00 1228.8 627 100.0
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.9e-238 829.3 648 69.0
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 1.0e-223 780.4 668 62.4
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 5.7e-214 748.0 663 61.1
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.7e-213 746.5 663 61.2
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.2e-213 746.1 628 63.5
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 9.1e-212 740.7 592 66.4
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 8.8e-207 724.2 670 59.4
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 3.3e-206 722.2 673 59.1
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.8e-205 719.2 635 59.7
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.4e-204 716.8 686 55.7
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 3.1e-204 715.7 662 60.0
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.9e-202 709.1 674 59.6
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 1.2e-200 703.7 654 57.6
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.7e-197 693.3 654 56.9
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 7.0e-196 688.0 586 59.7
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.1e-193 680.6 655 55.9
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 7.2e-193 677.9 645 56.4
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 1.8e-191 673.3 660 56.1
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 3.0e-191 672.5 664 55.9
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 1.2e-190 670.6 673 55.6
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 1.5e-190 670.2 575 60.0
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 7.0e-188 661.4 625 56.6
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 2.9e-186 656.0 638 56.9
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.5e-185 652.9 614 60.1
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.2e-184 650.6 593 58.2
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 8.0e-184 647.9 662 54.1
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.0e-183 647.5 596 57.4
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 6.8e-183 644.8 603 57.5
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 2.0e-182 643.3 611 57.8
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 2.6e-182 642.9 592 58.1
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.4e-180 637.1 637 55.1
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 2.4e-180 636.3 666 54.2
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.3e-178 630.6 506 65.4
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 3.6e-176 622.5 667 53.5
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 3.1e-175 619.4 668 54.0
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 1.2e-174 617.5 650 52.6
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.1e-172 610.9 539 60.3
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.6e-170 601.7 654 52.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 5.6e-169 598.6 664 52.1
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 3.6e-168 595.9 667 52.3
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 6.2e-168 595.1 620 52.6
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 3.4e-166 589.3 600 54.0
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 2.9e-165 586.3 654 50.9
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 3.7e-165 585.9 621 52.0
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 6.0e-163 578.6 609 52.2
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.1e-161 574.3 664 49.7
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 2.5e-161 573.2 660 47.3
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.6e-160 570.5 659 50.5
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.8e-160 569.7 502 61.0
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 6.2e-160 568.5 579 56.5
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.7e-157 560.5 658 48.0
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 1.7e-154 550.4 525 57.3
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 3.9e-154 549.3 433 63.3
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 8.6e-154 548.1 552 52.4
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 8.6e-154 548.1 385 69.6
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 5.6e-153 545.4 494 56.9
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.2e-152 544.3 623 48.8
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 2.8e-152 543.1 513 56.7
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 6.4e-149 531.9 433 61.4
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.2e-147 527.7 584 52.7
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 1.7e-146 523.9 538 55.6
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 4.0e-143 512.7 398 63.3
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 6.9e-143 511.9 402 64.9
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 9.0e-143 511.5 560 49.8
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 7.6e-142 508.4 644 46.7
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 4.9e-141 505.8 563 49.4
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 4.9e-141 505.8 569 48.9
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 2.1e-139 500.4 568 48.2
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.1e-137 494.6 527 52.8
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.9e-137 493.8 473 53.9
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 5.6e-137 492.3 645 44.8
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.6e-136 490.7 503 53.1
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 1.6e-136 490.7 560 48.0
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 2.4e-135 486.9 621 45.7
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 2.4e-135 486.9 621 45.7
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 4.0e-135 486.1 604 46.5
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 3.8e-133 479.6 503 52.5
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.4e-132 477.6 621 45.9
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 2.4e-132 476.9 621 46.1
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 1.2e-131 474.6 483 51.3
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 7.9e-131 471.9 425 60.2
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.1e-127 461.5 586 44.2
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 6.5e-125 452.2 531 49.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 3.7e-120 436.4 594 40.7
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 7.9e-115 418.7 522 46.7
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.9e-114 416.4 597 44.7
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.9e-113 414.1 592 44.9
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 2.2e-112 410.6 564 40.4
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 6.3e-112 409.1 426 52.6
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 8.2e-112 408.7 356 58.1
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 1.2e-110 404.8 344 58.7
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.2e-107 394.8 287 64.8
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.7e-107 393.7 581 42.9
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.8e-103 380.9 573 39.8
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 5.3e-103 379.4 250 70.8
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.4e-100 371.3 612 42.0
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.6e-99 367.9 485 48.2
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 2.1e-83 314.3 245 61.2
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 8.0e-75 285.8 444 39.4
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.7e-70 270.8 389 47.3
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 7.5e-57 226.1 297 49.8
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 7.1e-47 193.0 215 56.3
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 2.3e-42 177.9 270 45.9
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.1e-35 154.8 165 57.6
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 3.6e-35 154.1 218 45.4
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.4e-33 147.5 146 61.0
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.7e-29 135.2 253 29.2
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.3e-27 129.0 112 65.2
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 1.7e-24 118.6 268 28.7
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 8.4e-24 116.3 150 49.3
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 1.5e-20 105.5 88 65.9
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.4e-17 94.4 59 71.2
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 1.4e-10 72.4 54 55.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.2e-08 65.1 42 71.4
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.1e-07 62.8 37 75.7


User provided reference genes

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