Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A12T77 Lonicera japonica HOM05D004614 ORTHO05D005339 1.2e-184 649.8 347 100.0
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 7.4e-46 188.7 136 72.1
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 7.4e-46 188.7 136 72.1
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 1.3e-45 188.0 140 80.7
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 4.8e-45 186.0 140 80.0
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 1.1e-44 184.9 131 90.1
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 1.4e-44 184.5 140 79.3
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 1.8e-44 184.1 140 80.7
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 4.0e-44 183.0 140 80.7
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 4.0e-44 183.0 141 79.4
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 4.0e-44 183.0 140 80.7
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 4.0e-44 183.0 140 80.0
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 6.9e-44 182.2 147 74.8
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 1.2e-43 181.4 140 77.9
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 1.2e-43 181.4 140 78.6
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 1.5e-43 181.0 140 78.6
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 2.0e-43 180.6 135 78.5
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 2.6e-43 180.3 140 77.1
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 3.4e-43 179.9 166 69.9
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.4e-43 179.9 135 81.5
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 4.5e-43 179.5 140 77.1
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 4.5e-43 179.5 140 77.1
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 4.5e-43 179.5 135 80.0
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 5.8e-43 179.1 140 76.4
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 5.8e-43 179.1 140 77.1
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 5.8e-43 179.1 134 82.1
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 1.0e-42 178.3 140 81.4
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 1.0e-42 178.3 140 82.9
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 1.0e-42 178.3 140 82.9
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 1.0e-42 178.3 135 81.5
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 1.0e-42 178.3 140 82.9
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 1.0e-42 178.3 140 82.9
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 1.7e-42 177.6 140 76.4
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 2.2e-42 177.2 140 82.1
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 2.2e-42 177.2 140 82.1
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 2.2e-42 177.2 140 76.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.5e-42 175.6 140 77.1
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 8.4e-42 175.3 140 82.1
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 1.1e-41 174.9 129 84.5
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.1e-41 174.9 135 77.8
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 1.4e-41 174.5 140 75.0
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 2.5e-41 173.7 134 79.9
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 3.2e-41 173.3 140 81.4
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 3.2e-41 173.3 129 83.7
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 4.2e-41 172.9 147 72.1
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 5.5e-41 172.6 146 79.5
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 5.5e-41 172.6 129 82.9
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 7.1e-41 172.2 129 82.9
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 7.1e-41 172.2 129 82.9
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 7.1e-41 172.2 129 82.9
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 7.1e-41 172.2 140 82.1
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 9.3e-41 171.8 140 71.4
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.2e-40 171.4 160 70.6
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 1.6e-40 171.0 129 81.4
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 2.1e-40 170.6 129 82.2
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.1e-40 170.6 140 76.4
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 2.7e-40 170.2 129 84.5
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 2.7e-40 170.2 140 81.4
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.7e-40 170.2 140 81.4
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.7e-40 170.2 140 81.4
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 2.7e-40 170.2 129 82.2
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 2.7e-40 170.2 140 77.1
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 3.5e-40 169.9 129 81.4
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 4.6e-40 169.5 140 77.9
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 4.6e-40 169.5 128 82.0
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 6.0e-40 169.1 128 83.6
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 7.9e-40 168.7 129 81.4
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 7.9e-40 168.7 129 80.6
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 1.0e-39 168.3 129 81.4
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.0e-39 168.3 135 74.1
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 1.0e-39 168.3 128 82.0
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 1.3e-39 167.9 140 79.3
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 2.3e-39 167.2 140 74.3
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 5.1e-39 166.0 127 81.1
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 5.1e-39 166.0 128 80.5
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 5.1e-39 166.0 128 80.5
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.1e-39 166.0 128 80.5
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 6.7e-39 165.6 129 84.5
EL10Ac1g01977 Beta vulgaris HOM05D004614 ORTHO05D005339 8.7e-39 165.2 111 71.2
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 1.1e-38 164.9 129 79.1
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 1.5e-38 164.5 140 81.4
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 1.5e-38 164.5 129 86.8
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 2.5e-38 163.7 127 88.2
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.5e-38 163.7 129 79.8
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 2.5e-38 163.7 141 74.5
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 3.3e-38 163.3 127 80.3
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 4.3e-38 162.9 128 84.4
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 5.7e-38 162.5 128 85.9
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 5.7e-38 162.5 148 70.3
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 5.7e-38 162.5 135 73.3
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 7.4e-38 162.2 128 85.2
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 9.6e-38 161.8 130 75.4
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 4.8e-37 159.5 127 87.4
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 1.1e-36 158.3 126 87.3
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 1.4e-36 157.9 127 84.3
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 2.4e-36 157.1 133 84.2
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 2.0e-35 154.1 127 84.3
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 2.0e-35 154.1 127 84.3
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 5.8e-35 152.5 127 81.9
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 7.6e-35 152.1 127 81.9
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 1.3e-34 151.4 126 84.1
CARHR292370 Cardamine hirsuta HOM05D004614 ORTHO05D005339 2.9e-34 150.2 79 86.1
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.8e-34 149.8 126 84.9
CSS0047318 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 5.0e-34 149.4 81 82.7
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 5.0e-34 149.4 140 69.3
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.9e-33 147.5 79 87.3
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 1.9e-33 147.5 79 87.3
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 4.2e-33 146.4 79 83.5
Haze_22759 Corylus avellana HOM05D004614 ORTHO05D005339 7.1e-33 145.6 79 84.8
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 9.3e-33 145.2 79 82.3
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 1.2e-32 144.8 110 66.4
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.6e-32 144.4 140 63.6
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 6.1e-32 142.5 141 63.1
Zm00001eb002680 Zea mays HOM05D004614 ORTHO05D005339 7.9e-32 142.1 79 81.0
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.3e-31 141.4 67 91.0
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 3.0e-31 140.2 79 82.3
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 8.7e-31 138.7 133 65.4
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 1.5e-30 137.9 79 79.7
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 5.7e-30 136.0 136 73.5
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 6.3e-29 132.5 231 46.3
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.4e-28 131.3 80 78.8
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 1.1e-25 121.7 109 76.1
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 2.5e-25 120.6 79 73.4
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 2.5e-25 120.6 79 73.4
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 5.1e-23 112.8 111 78.4
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 3.2e-17 93.6 85 89.4
SMO202G0022 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 1.2e-16 91.7 123 50.4
GSVIVG01023988001 Vitis vinifera HOM05D004614 ORTHO05D005339 1.1e-14 85.1 53 69.8
Nitab4.5_0006949g0040 Nicotiana tabacum HOM05D004614 ORTHO05D005339 5.3e-12 76.3 42 78.6
CDE05G0961 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 8.5e-10 68.9 33 78.8
Nn3g19455 Nelumbo nucifera HOM05D006445 ORTHO05D008030 2.5e-09 67.4 71 49.3
PGR031G1697 Punica granatum HOM05D004614 ORTHO05D005339 7.2e-09 65.9 67 91.0
HPP92_007968 Vanilla planifolia HOM05D006445 ORTHO05D008030 2.7e-08 63.9 71 46.5
MCO16G542 Micromonas commoda HOM05D004614 ORTHO05D005339 1.8e-07 61.2 88 39.8
Thhalv10020381m.g Eutrema salsugineum HOM05D006445 ORTHO05D008030 2.3e-07 60.8 78 42.3
Sp3g20620 Schrenkiella parvula HOM05D006445 ORTHO05D008030 3.0e-07 60.5 78 41.0
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 5.2e-07 59.7 71 42.3
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 5.2e-07 59.7 71 42.3
PGR004G1989 Punica granatum HOM05D006445 ORTHO05D008030 6.7e-07 59.3 71 42.3
TAR549G0005 Trochodendron aralioides HOM05D006445 ORTHO05D008030 6.7e-07 59.3 71 43.7
SMO351G0143 Selaginella moellendorffii HOM05D006445 ORTHO05D008030 1.1e-06 58.5 71 43.7
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 1.1e-06 58.5 37 56.8
CANSAT78G1649 Cannabis sativa HOM05D006445 ORTHO05D008030 1.5e-06 58.2 71 42.3
Aqoxy5G00384 Aquilegia oxysepala HOM05D006445 ORTHO05D008030 2.0e-06 57.8 71 42.3
arahy.Tifrunner.gnm1.ann1.G28WYQ Arachis hypogaea HOM05D006445 ORTHO05D008030 2.0e-06 57.8 71 42.3
BcaB04g20485 Brassica carinata HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
BcaC09g49223 Brassica carinata HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
A01p32190 Brassica napus HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
C01p41220 Brassica napus HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
BolC1t04076H Brassica oleracea HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
BraA01t03345Z Brassica rapa HOM05D006445 ORTHO05D008030 3.3e-06 57.0 78 39.7
Actinidia08458 Actinidia chinensis HOM05D006445 ORTHO05D008030 5.7e-06 56.2 71 42.3
MELO3C014278.2 Cucumis melo HOM05D006445 ORTHO05D008030 5.7e-06 56.2 79 38.0
CsaV3_2G013340 Cucumis sativus L. HOM05D006445 ORTHO05D008030 5.7e-06 56.2 79 38.0
Aa31LG8G9430 Aethionema arabicum HOM05D006445 ORTHO05D008030 7.5e-06 55.8 71 43.7
Cpa.g.sc44.136 Carica papaya HOM05D006445 ORTHO05D008030 7.5e-06 55.8 71 40.8
Sed0014630 Sechium edule HOM05D006445 ORTHO05D008030 7.5e-06 55.8 79 39.2
Atru.chr4.2321 Acer truncatum HOM05D006445 ORTHO05D008030 9.7e-06 55.5 71 40.8


User provided reference genes

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