Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 1.4e-153 546.2 276 100.0
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 1.3e-101 373.6 266 74.4
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 1.1e-100 370.5 266 73.7
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 1.4e-100 370.2 265 73.2
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 5.4e-100 368.2 263 74.5
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 5.4e-100 368.2 263 74.9
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 5.4e-100 368.2 267 72.7
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 9.2e-100 367.5 265 73.2
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 9.2e-100 367.5 265 73.2
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 1.6e-99 366.7 274 69.3
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 2.7e-99 365.9 264 73.1
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 3.5e-99 365.5 265 72.1
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 4.6e-99 365.2 265 74.0
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 4.6e-99 365.2 265 73.6
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 4.6e-99 365.2 263 74.1
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 6.0e-99 364.8 265 72.5
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 6.0e-99 364.8 265 72.8
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 6.0e-99 364.8 265 72.5
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 7.8e-99 364.4 265 72.5
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 7.8e-99 364.4 265 72.8
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 1.0e-98 364.0 265 72.1
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 1.0e-98 364.0 265 72.8
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.3e-98 363.6 265 72.1
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.7e-98 363.2 264 73.1
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 1.7e-98 363.2 263 73.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 1.7e-98 363.2 265 72.5
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.7e-98 363.2 265 72.5
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 2.3e-98 362.8 265 72.5
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.0e-98 362.5 265 72.1
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.0e-98 362.5 265 72.5
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 3.0e-98 362.5 265 72.1
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 3.9e-98 362.1 260 73.1
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 3.9e-98 362.1 263 72.6
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.9e-98 362.1 265 72.1
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 5.0e-98 361.7 265 71.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 5.0e-98 361.7 265 72.8
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 6.6e-98 361.3 265 72.5
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 6.6e-98 361.3 260 73.1
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 6.6e-98 361.3 265 71.3
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 6.6e-98 361.3 265 72.5
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 6.6e-98 361.3 265 71.3
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 8.6e-98 360.9 265 72.8
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 8.6e-98 360.9 263 72.2
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 8.6e-98 360.9 264 72.0
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 1.1e-97 360.5 265 72.5
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.1e-97 360.5 265 72.1
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.1e-97 360.5 264 72.0
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 1.1e-97 360.5 265 72.1
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 1.5e-97 360.1 263 73.0
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 1.5e-97 360.1 263 73.4
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 1.5e-97 360.1 265 72.1
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 1.5e-97 360.1 263 73.4
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.5e-97 360.1 263 73.0
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.9e-97 359.8 263 71.5
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 1.9e-97 359.8 265 71.3
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 2.5e-97 359.4 265 70.2
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 3.3e-97 359.0 265 71.3
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 3.3e-97 359.0 265 70.9
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 3.3e-97 359.0 265 71.7
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 4.3e-97 358.6 265 71.7
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 4.3e-97 358.6 265 70.6
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 4.3e-97 358.6 265 71.7
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 4.3e-97 358.6 263 73.0
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 5.6e-97 358.2 265 71.7
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 5.6e-97 358.2 265 71.7
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 5.6e-97 358.2 265 71.7
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 5.6e-97 358.2 265 71.7
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 5.6e-97 358.2 263 72.2
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 5.6e-97 358.2 265 72.1
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 5.6e-97 358.2 275 69.1
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 1.2e-96 357.1 265 71.3
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.2e-96 357.1 265 70.9
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 1.2e-96 357.1 265 71.3
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 1.2e-96 357.1 263 72.6
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 1.2e-96 357.1 263 72.6
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 1.6e-96 356.7 265 71.3
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 1.6e-96 356.7 265 71.3
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.6e-96 356.7 265 71.3
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.6e-96 356.7 263 72.2
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 2.1e-96 356.3 265 71.3
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.1e-96 356.3 263 72.2
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.1e-96 356.3 263 72.2
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.1e-96 356.3 263 72.2
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.8e-96 355.9 265 71.3
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 3.6e-96 355.5 265 71.3
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 3.6e-96 355.5 265 71.3
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.6e-96 355.5 265 70.6
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 4.7e-96 355.1 265 71.3
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 4.7e-96 355.1 265 70.9
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 4.7e-96 355.1 265 71.3
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 6.2e-96 354.8 265 70.6
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 8.1e-96 354.4 265 70.9
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 8.1e-96 354.4 265 71.3
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 1.1e-95 354.0 265 70.6
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 1.4e-95 353.6 263 71.1
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 2.3e-95 352.8 265 70.6
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.1e-95 352.4 265 70.2
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 6.8e-95 351.3 270 70.0
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 6.8e-95 351.3 263 70.3
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 2.0e-94 349.7 265 70.2
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 5.8e-94 348.2 261 70.5
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 1.7e-93 346.7 263 69.2
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.1e-92 344.0 263 70.3
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 2.4e-92 342.8 258 70.9
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 7.1e-92 341.3 263 68.8
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 1.2e-91 340.5 266 68.4
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 6.0e-91 338.2 260 70.0
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 5.1e-90 335.1 341 56.9
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 3.3e-89 332.4 265 68.7
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 4.3e-89 332.0 278 65.5
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 5.6e-89 331.6 276 65.2
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 2.8e-88 329.3 248 70.2
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.1e-87 327.4 252 67.9
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 2.4e-87 326.2 199 83.4
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 3.1e-87 325.9 265 67.2
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 4.0e-87 325.5 263 68.4
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 3.8e-85 318.9 210 77.6
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 3.8e-85 318.9 210 77.6
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 6.4e-85 318.2 259 67.2
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 3.2e-84 315.8 199 80.4
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 7.1e-84 314.7 263 60.8
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 8.7e-82 307.8 265 60.4
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.5e-81 307.0 265 62.6
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 1.9e-81 306.6 242 68.2
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 5.6e-81 305.1 265 60.8
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.7e-80 302.0 210 74.3
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 4.0e-79 298.9 265 61.9
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 8.4e-77 291.2 214 71.5
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 1.9e-76 290.0 262 58.0
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 3.2e-76 289.3 208 72.1
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 2.3e-74 283.1 260 56.2
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.9e-73 280.0 197 74.6
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 2.0e-70 270.0 261 56.3
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 1.6e-64 250.4 280 51.4
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 1.1e-63 247.7 183 70.5
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 1.8e-63 246.9 263 56.7
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.8e-63 246.9 258 52.7
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 9.9e-62 241.1 169 71.6
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 2.9e-61 239.6 167 71.9
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 8.2e-56 221.5 169 69.2
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 1.8e-55 220.3 257 47.1
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 6.9e-55 218.4 256 47.7
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 1.2e-54 217.6 113 92.0
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 2.7e-51 206.5 168 67.3
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 1.1e-49 201.1 132 75.8
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.1e-49 201.1 284 48.9
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.7e-45 187.2 202 54.5
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 1.4e-44 184.1 131 73.3
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 1.4e-44 184.1 131 73.3
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 4.2e-44 182.6 131 72.5
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 3.9e-42 176.0 99 87.9
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 5.3e-39 165.6 94 86.2
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.0e-37 161.4 127 69.3
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.7e-37 160.6 210 50.0
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 6.7e-34 148.7 90 78.9
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 9.4e-28 128.3 123 57.7
Cc07_g21180 Coffea canephora HOM05D004063 ORTHO05D005326 8.8e-26 121.7 96 69.8
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.2e-22 111.3 103 58.3
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 4.5e-22 109.4 55 90.9
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 1.7e-21 107.5 105 53.3
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.4e-18 97.8 84 61.9
SalBow5G1320 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.5e-12 77.8 51 82.4
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 1.5e-12 77.8 152 41.4
arahy.Tifrunner.gnm1.ann1.PZHE2U Arachis hypogaea HOM05D004063 ORTHO05D005326 8.0e-11 72.0 117 43.6
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 5.7e-09 65.9 67 55.2
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 9.8e-09 65.1 78 51.3
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 4.8e-08 62.8 36 77.8
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 5.4e-07 59.3 82 43.9


User provided reference genes

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