Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 5.7e-172 607.8 386 100.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.2e-129 467.2 383 80.2
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.5e-116 423.7 383 73.9
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 4.6e-113 412.1 380 72.6
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 3.0e-112 409.5 379 74.7
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.1e-110 403.3 383 71.8
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 8.0e-110 401.4 381 70.9
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.0e-108 396.7 383 70.0
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 4.4e-108 395.6 381 70.1
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 7.5e-108 394.8 381 70.1
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 8.3e-107 391.3 380 70.0
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.9e-106 390.2 385 71.9
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 2.4e-106 389.8 381 71.1
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.4e-106 389.8 379 70.4
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.6e-105 385.6 380 69.2
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.0e-104 384.4 380 69.5
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 6.6e-104 381.7 369 71.8
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.1e-103 380.9 380 70.0
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.2e-102 377.5 381 69.6
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.2e-102 377.5 383 62.1
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 8.9e-101 371.3 383 69.7
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.0e-100 370.2 382 69.1
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 2.0e-100 370.2 382 70.7
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 2.6e-100 369.8 379 66.5
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 2.9e-99 366.3 383 68.9
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 6.4e-99 365.2 382 67.8
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 4.1e-98 362.5 381 62.2
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 5.4e-98 362.1 385 68.3
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 2.1e-97 360.1 380 67.4
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.1e-97 360.1 378 65.9
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 3.5e-97 359.4 384 67.7
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 3.5e-97 359.4 383 66.1
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.3e-96 357.5 379 66.5
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.3e-96 357.5 385 68.6
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.0e-96 356.3 383 68.4
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 4.3e-95 352.4 383 67.6
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 5.6e-95 352.1 381 65.1
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 5.6e-95 352.1 357 71.7
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 6.2e-94 348.6 381 64.6
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 8.1e-94 348.2 327 73.4
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 2.4e-93 346.7 380 67.9
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 3.1e-93 346.3 381 65.1
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 3.1e-93 346.3 381 64.3
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 8.9e-93 344.7 381 65.9
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 5.8e-92 342.0 382 66.8
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 9.9e-92 341.3 327 74.6
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.9e-91 339.7 385 63.1
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 3.8e-91 339.3 379 63.6
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 7.1e-90 335.1 381 63.3
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 2.7e-89 333.2 379 62.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 7.8e-89 331.6 383 65.5
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 5.1e-88 328.9 326 75.2
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 3.3e-87 326.2 381 64.6
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 7.3e-87 325.1 378 63.0
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 3.6e-86 322.8 379 63.1
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 4.7e-86 322.4 385 61.0
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.1e-85 321.2 381 63.5
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 1.8e-85 320.5 370 63.5
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 1.8e-85 320.5 379 62.0
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.0e-84 317.0 373 62.7
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 2.0e-84 317.0 325 71.4
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 1.7e-83 313.9 379 60.4
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.4e-82 310.1 378 58.2
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 7.1e-82 308.5 379 60.4
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 9.3e-82 308.1 380 62.4
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 3.5e-81 306.2 381 65.1
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.9e-80 302.8 384 59.6
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 3.3e-79 299.7 383 62.7
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.6e-78 296.2 381 57.5
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 5.3e-77 292.4 383 61.9
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.2e-76 291.2 379 59.4
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.5e-76 290.8 379 61.5
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 9.9e-76 288.1 379 57.5
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 6.4e-75 285.4 380 58.9
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.1e-73 280.4 383 60.3
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.3e-72 276.9 378 40.2
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 3.0e-72 276.6 355 63.7
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.5e-71 274.2 380 56.6
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.5e-71 273.5 380 53.9
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.1e-69 268.1 381 60.9
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 1.5e-68 264.2 391 56.5
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 2.0e-68 263.8 377 57.8
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 1.7e-67 260.8 381 60.1
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.2e-67 260.4 392 56.1
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.5e-63 247.7 382 54.5
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 1.5e-63 247.7 382 54.5
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 9.6e-63 245.0 381 58.8
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 6.2e-62 242.3 321 41.1
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 6.2e-62 242.3 321 41.1
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 2.0e-60 237.3 384 55.5
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 4.9e-59 232.6 382 50.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 2.5e-58 230.3 358 39.1
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 2.5e-58 230.3 358 39.1
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 9.3e-58 228.4 326 58.9
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 8.8e-48 195.3 326 56.7
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 2.8e-46 190.3 324 59.6
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 3.1e-45 186.8 382 47.4
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 3.1e-45 186.8 382 47.4
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 9.1e-45 185.3 381 50.1
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 3.2e-42 176.8 315 34.9
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.4e-37 161.4 143 54.5
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 5.0e-35 152.9 138 54.3
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 2.0e-31 141.0 135 48.9
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 3.8e-11 73.6 111 38.7
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 3.8e-11 73.6 111 38.7
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 9.5e-10 68.9 149 28.9
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 3.6e-09 67.0 48 60.4
Atru.chr10.1354 Acer truncatum HOM05D007093 ORTHO05D008910 4.7e-09 66.6 38 73.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.3e-08 64.3 150 27.3
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 6.8e-08 62.8 103 35.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.6e-07 60.8 145 26.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 3.4e-07 60.5 145 26.9
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.4e-07 60.5 145 27.6
SMO340G0043 Selaginella moellendorffii HOM05D031821 ORTHO05D036827 4.4e-07 60.1 141 29.1
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 7.5e-07 59.3 141 26.2
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.3e-06 58.5 147 26.5
PSO541G4059 Papaver somniferum HOM05D000001 ORTHO05D000003 1.7e-06 58.2 158 25.9
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.2e-06 57.8 140 26.4
AagrBONN_evm.TU.Sc2ySwM_362.2314 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 57.4 176 30.1
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.7e-06 57.0 145 26.2
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 6.3e-06 56.2 141 27.0
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 8.3e-06 55.8 48 56.2
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 8.3e-06 55.8 141 26.2


User provided reference genes

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