Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A115T85 Lonicera japonica HOM05D000100 ORTHO05D018398 1.3e-64 249.6 125 100.0
Lj4C115T14 Lonicera japonica HOM05D000100 ORTHO05D004702 6.2e-19 97.8 76 63.2
CSS0024320 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.2e-17 93.6 76 60.5
CSS0016013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.6e-17 92.4 76 59.2
QL02p039350 Quercus lobata HOM05D000100 ORTHO05D004702 4.4e-17 91.7 76 52.6
EL10Ac2g03497 Beta vulgaris HOM05D000100 ORTHO05D004702 4.1e-15 85.1 76 51.3
Prupe.3G260100 Prunus persica HOM05D000100 ORTHO05D004702 5.4e-15 84.7 73 53.4
Thecc.04G090100 Theobroma cacao HOM05D000100 ORTHO05D004702 7.0e-15 84.3 76 50.0
vmacro05669 Vaccinium macrocarpon HOM05D000100 ORTHO05D004702 7.0e-15 84.3 80 53.8
Cc03_g14830 Coffea canephora HOM05D000100 ORTHO05D004702 9.2e-15 84.0 112 40.2
Oeu062141.1 Olea europaea HOM05D000100 ORTHO05D004702 9.2e-15 84.0 77 49.4
Prupe.3G260000 Prunus persica HOM05D000100 ORTHO05D004702 1.6e-14 83.2 74 55.4
Rhsim10G0047000 Rhododendron simsii HOM05D000100 ORTHO05D004702 2.7e-14 82.4 77 54.5
MD17G1055700 Malus domestica HOM05D000100 ORTHO05D004702 6.0e-14 81.3 93 44.1
Duzib147G0540 Durio zibethinus HOM05D000100 ORTHO05D004702 7.8e-14 80.9 76 48.7
EL10Ac2g03041 Beta vulgaris HOM05D000100 ORTHO05D004702 1.0e-13 80.5 76 50.0
FAN05G2715 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.3e-13 80.1 98 41.8
Nn4g23330 Nelumbo nucifera HOM05D000100 ORTHO05D004702 1.7e-13 79.7 124 37.9
Lj4C115T12 Lonicera japonica HOM05D000100 ORTHO05D004702 2.3e-13 79.3 83 50.6
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 3.9e-13 78.6 115 37.4
ECA246G1680 Erigeron canadensis HOM05D001596 ORTHO05D007454 3.9e-13 78.6 71 53.5
RcHm_v2.0_Chr2g0166671 Rosa chinensis HOM05D000100 ORTHO05D004702 8.6e-13 77.4 98 40.8
Sc11g0004830 Simmondsia chinensis HOM05D000100 ORTHO05D004702 4.3e-12 75.1 78 47.4
Gohir.A05G369800 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.2e-11 73.6 70 47.1
Manes.09G159600 Manihot esculenta HOM05D000100 ORTHO05D004702 1.2e-11 73.6 76 47.4
Sc11g0004820 Simmondsia chinensis HOM05D000100 ORTHO05D004702 1.2e-11 73.6 78 47.4
RcHm_v2.0_Chr2g0166701 Rosa chinensis HOM05D000100 ORTHO05D004702 1.6e-11 73.2 98 38.8
FvH4_6g47570 Fragaria vesca HOM05D000100 ORTHO05D004702 2.1e-11 72.8 98 37.8
FAN09G3446 Fragaria x ananassa HOM05D000100 ORTHO05D004702 2.8e-11 72.4 98 38.8
FAN14G5013 Fragaria x ananassa HOM05D000100 ORTHO05D004702 2.8e-11 72.4 92 38.0
COL.COLO4_07432 Corchorus olitorius HOM05D000100 ORTHO05D004702 3.6e-11 72.0 76 43.4
Eucgr.D01288 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.2e-11 71.2 74 40.5
Nn2g12291 Nelumbo nucifera HOM05D000100 ORTHO05D004702 6.2e-11 71.2 76 43.4
Actinidia26242 Actinidia chinensis HOM05D000100 ORTHO05D004702 8.1e-11 70.9 78 51.3
MBI16_g15565_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D004702 8.1e-11 70.9 79 46.8
PSO528G0286 Papaver somniferum HOM05D000100 ORTHO05D004702 8.1e-11 70.9 77 44.2
Psat7g154280 Pisum sativum HOM05D000100 ORTHO05D004702 8.1e-11 70.9 78 42.3
Gohir.D04G045500 Gossypium hirsutum HOM05D000100 ORTHO05D004702 1.1e-10 70.5 92 38.0
Gorai.012G050700 Gossypium raimondii HOM05D000100 ORTHO05D004702 1.1e-10 70.5 70 45.7
Lj2g0007579 Lotus japonicus HOM05D000100 ORTHO05D004702 1.1e-10 70.5 72 44.4
Eucgr.E03235 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.4e-10 70.1 74 39.2
AUR62018135 Chenopodium quinoa HOM05D000100 ORTHO05D004702 1.8e-10 69.7 71 49.3
Dinv11491 Davidia involucrata HOM05D000100 ORTHO05D004702 1.8e-10 69.7 114 37.7
FvH4_6g47580 Fragaria vesca HOM05D000100 ORTHO05D004702 2.3e-10 69.3 98 37.8
CiPaw.06G090300 Carya illinoinensis HOM05D000100 ORTHO05D004702 3.1e-10 68.9 76 43.4
Psat2g128120 Pisum sativum HOM05D000100 ORTHO05D004702 3.1e-10 68.9 72 44.4
Hma1.2p1_1813F.1_g303870 Hydrangea macrophylla HOM05D000100 ORTHO05D004702 5.2e-10 68.2 79 48.1
PGR083G2848 Punica granatum HOM05D000100 ORTHO05D004702 5.2e-10 68.2 71 39.4
PGSC0003DMG400039917 Solanum tuberosum HOM05D000100 ORTHO05D004702 5.2e-10 68.2 70 47.1
Eucgr.E03231 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.8e-10 67.8 76 40.8
Eucgr.E03236 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.8e-10 67.8 74 37.8
Medtr4g082820 Medicago truncatula HOM05D000100 ORTHO05D004702 6.8e-10 67.8 78 41.0
Peaxi162Scf00166g00826 Petunia axillaris HOM05D000100 ORTHO05D004702 6.8e-10 67.8 82 39.0
Lalb_Chr17g0341021 Lupinus albus HOM05D000100 ORTHO05D004702 8.9e-10 67.4 72 43.1
DCAR_021666 Daucus carota HOM05D000100 ORTHO05D004702 1.2e-09 67.0 73 50.7
Eucgr.E03234 Eucalyptus grandis HOM05D000100 ORTHO05D004702 1.2e-09 67.0 67 46.3
Os06g0288300 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 2.0e-09 66.2 79 44.3
AUR62034474 Chenopodium quinoa HOM05D000100 ORTHO05D004702 2.6e-09 65.9 71 46.5
MBI04_g46313_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D018398 2.6e-09 65.9 79 44.3
MBI06_g47001_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D018398 3.4e-09 65.5 101 39.6
PGR083G1316 Punica granatum HOM05D000100 ORTHO05D004702 3.4e-09 65.5 71 39.4
Migut.H00661 Erythranthe guttata HOM05D000100 ORTHO05D004702 5.8e-09 64.7 73 49.3
Medtr6g078320 Medicago truncatula HOM05D000100 ORTHO05D004702 5.8e-09 64.7 76 43.4
Gohir.A13G080100 Gossypium hirsutum HOM05D000100 ORTHO05D004702 7.5e-09 64.3 82 41.5
TPR.G39983 Trifolium pratense HOM05D000100 ORTHO05D004702 9.9e-09 63.9 77 37.7
MELO3C012135.2 Cucumis melo HOM05D000100 ORTHO05D004702 1.3e-08 63.5 71 39.4
DCAR_025404 Daucus carota HOM05D000100 ORTHO05D004702 1.7e-08 63.2 78 42.3
Duzib268G1512 Durio zibethinus HOM05D000100 ORTHO05D004702 1.7e-08 63.2 75 40.0
Migut.H00659 Erythranthe guttata HOM05D000100 ORTHO05D004702 1.7e-08 63.2 72 41.7
QL03p070943 Quercus lobata HOM05D000100 ORTHO05D004702 1.7e-08 63.2 75 34.7
Sopen02g033250 Solanum pennellii HOM05D000100 ORTHO05D004702 1.7e-08 63.2 70 44.3
CSS0029818 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.2e-08 62.8 114 36.8
CANSAT01G2651 Cannabis sativa HOM05D000100 ORTHO05D004702 2.2e-08 62.8 76 42.1
Aqoxy3G03555 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 2.9e-08 62.4 96 36.5
Aqoxy3G03556 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 2.9e-08 62.4 120 33.3
CsaV3_5G033150 Cucumis sativus L. HOM05D000100 ORTHO05D004702 2.9e-08 62.4 71 38.0
Medtr4g082810 Medicago truncatula HOM05D000100 ORTHO05D004702 2.9e-08 62.4 103 33.0
RcHm_v2.0_Chr4g0438841 Rosa chinensis HOM05D000100 ORTHO05D018398 2.9e-08 62.4 73 38.4
Ciclev10031419m.g Citrus clementina HOM05D000100 ORTHO05D004702 3.7e-08 62.0 76 38.2
Migut.H00660 Erythranthe guttata HOM05D000100 ORTHO05D004702 3.7e-08 62.0 74 45.9
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.9e-08 61.6 78 43.6
Nn3g17373 Nelumbo nucifera HOM05D000100 ORTHO05D004702 4.9e-08 61.6 76 42.1
Glyma.16G212000 Glycine max HOM05D000100 ORTHO05D004702 6.4e-08 61.2 76 38.2
Thecc.02G336200 Theobroma cacao HOM05D000100 ORTHO05D004702 6.4e-08 61.2 80 36.2
Gohir.D13G079900 Gossypium hirsutum HOM05D000100 ORTHO05D004702 8.3e-08 60.8 86 38.4
Lj2g0020882 Lotus japonicus HOM05D000100 ORTHO05D004702 8.3e-08 60.8 77 36.4
MBI18_g23348_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D018398 8.3e-08 60.8 75 41.3
ClCG05G023870 Citrullus lanatus HOM05D000100 ORTHO05D004702 1.4e-07 60.1 71 36.6
SalBow1G3072 Salvia bowleyana HOM05D000100 ORTHO05D004702 1.4e-07 60.1 119 31.9
HPP92_026691 Vanilla planifolia HOM05D000100 ORTHO05D004702 1.9e-07 59.7 67 40.3
Eucgr.E03232 Eucalyptus grandis HOM05D000100 ORTHO05D004702 2.4e-07 59.3 74 41.9
CiPaw.06G090200 Carya illinoinensis HOM05D000100 ORTHO05D004702 3.2e-07 58.9 76 36.8
Rhsim08G0073000 Rhododendron simsii HOM05D000100 ORTHO05D004702 4.1e-07 58.5 74 41.9
unitig_744.g24269 Utricularia gibba HOM05D000100 ORTHO05D004702 4.1e-07 58.5 87 35.6
Atru.chr11.1687 Acer truncatum HOM05D000100 ORTHO05D004702 5.4e-07 58.2 117 30.8
Eucgr.E03233 Eucalyptus grandis HOM05D000100 ORTHO05D004702 5.4e-07 58.2 106 31.1
COL.COLO4_27929 Corchorus olitorius HOM05D000100 ORTHO05D004702 7.1e-07 57.8 80 35.0
Prupe.1G282300 Prunus persica HOM05D000100 ORTHO05D004702 7.1e-07 57.8 80 38.8
Os06g0289200 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 9.2e-07 57.4 83 34.9
Thecc.02G335900 Theobroma cacao HOM05D000100 ORTHO05D004702 9.2e-07 57.4 77 39.0
TWI75G0577 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 9.2e-07 57.4 72 40.3
Sed0019811 Sechium edule HOM05D000100 ORTHO05D004702 1.6e-06 56.6 71 33.8
Zm00001eb280920 Zea mays HOM05D000100 ORTHO05D004702 1.6e-06 56.6 85 36.5
Gorai.013G091400 Gossypium raimondii HOM05D000100 ORTHO05D004702 2.1e-06 56.2 71 38.0
Ca_18817_v3 Cicer arietinum L. HOM05D000100 ORTHO05D004702 2.7e-06 55.8 78 34.6
Eucgr.J01468 Eucalyptus grandis HOM05D000100 ORTHO05D004702 2.7e-06 55.8 78 41.0
MD16G1064500 Malus domestica HOM05D000100 ORTHO05D004702 2.7e-06 55.8 78 38.5
Atru.chr11.1686 Acer truncatum HOM05D000100 ORTHO05D004702 3.5e-06 55.5 76 34.2
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 3.5e-06 55.5 76 35.5
RcHm_v2.0_Chr2g0166721 Rosa chinensis HOM05D000100 ORTHO05D004702 3.5e-06 55.5 76 38.2
Cfa008904 Carpinus fangiana HOM05D000100 ORTHO05D004702 4.6e-06 55.1 76 35.5
Os06g0289900 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 4.6e-06 55.1 71 38.0
TWI75G1492 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 4.6e-06 55.1 76 38.2
Solyc02g088500.1 Solanum lycopersicum HOM05D000100 ORTHO05D004702 6.0e-06 54.7 53 47.2
Sopen02g033210 Solanum pennellii HOM05D000100 ORTHO05D004702 6.0e-06 54.7 53 47.2
Manes.02G050500 Manihot esculenta HOM05D000100 ORTHO05D004702 7.8e-06 54.3 74 39.2
PGR083G0325 Punica granatum HOM05D000100 ORTHO05D004702 7.8e-06 54.3 76 36.8
Zm00001eb280930 Zea mays HOM05D000100 ORTHO05D004702 7.8e-06 54.3 74 37.8


User provided reference genes

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