Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A115T83 Lonicera japonica HOM05D003516 ORTHO05D004068 9.9e-135 483.4 238 100.0
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 1.7e-110 402.9 229 85.6
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 5.0e-110 401.4 228 85.5
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 2.1e-108 396.0 229 83.4
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 6.1e-108 394.4 225 82.7
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 6.7e-107 391.0 229 82.5
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 1.9e-106 389.4 229 81.2
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 1.9e-106 389.4 227 81.1
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 2.5e-106 389.0 227 81.9
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 3.3e-106 388.7 229 79.5
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 5.7e-106 387.9 226 80.5
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 7.4e-106 387.5 226 81.9
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 9.7e-106 387.1 229 80.8
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 9.7e-106 387.1 230 81.3
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 9.7e-106 387.1 229 81.2
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 1.3e-105 386.7 227 81.1
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 2.8e-105 385.6 231 80.1
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 3.7e-105 385.2 226 80.1
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 4.8e-105 384.8 229 79.9
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 6.3e-105 384.4 229 79.0
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 8.2e-105 384.0 224 82.6
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 8.2e-105 384.0 226 79.6
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 1.4e-104 383.3 229 79.5
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.8e-104 382.9 226 79.2
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.8e-104 382.9 229 78.2
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 2.4e-104 382.5 226 78.8
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 3.1e-104 382.1 229 79.0
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 3.1e-104 382.1 229 79.0
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 3.1e-104 382.1 226 79.6
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 4.1e-104 381.7 227 78.9
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 5.3e-104 381.3 226 79.2
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 6.9e-104 380.9 229 76.0
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 6.9e-104 380.9 229 76.0
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 1.5e-103 379.8 227 78.4
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 1.5e-103 379.8 229 78.2
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.0e-103 379.4 228 78.1
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 2.6e-103 379.0 229 80.3
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 3.4e-103 378.6 229 79.0
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 5.9e-103 377.9 227 79.7
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 7.7e-103 377.5 227 78.0
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 7.7e-103 377.5 229 79.0
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 1.3e-102 376.7 230 77.0
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 3.8e-102 375.2 229 76.4
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 1.4e-101 373.2 227 77.5
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 1.4e-101 373.2 229 77.7
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 1.4e-101 373.2 227 75.8
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 1.9e-101 372.9 229 78.2
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 2.5e-101 372.5 226 78.3
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 3.2e-101 372.1 229 76.9
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 3.2e-101 372.1 228 76.3
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 4.2e-101 371.7 227 77.5
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 4.2e-101 371.7 230 77.4
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 5.5e-101 371.3 223 80.3
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 7.2e-101 370.9 227 77.5
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 7.2e-101 370.9 227 77.5
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 2.1e-100 369.4 227 77.1
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 2.7e-100 369.0 229 76.0
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 2.7e-100 369.0 224 77.2
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 1.0e-99 367.1 229 75.5
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 1.4e-99 366.7 229 75.1
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 2.3e-99 365.9 229 76.9
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 3.9e-99 365.2 230 75.7
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 3.9e-99 365.2 226 76.5
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 5.1e-99 364.8 224 75.9
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 8.8e-99 364.0 221 77.8
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 8.8e-99 364.0 226 77.0
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.5e-98 363.2 229 76.0
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 3.3e-98 362.1 226 76.5
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 3.3e-98 362.1 226 75.2
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 4.4e-98 361.7 231 74.0
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 7.4e-98 360.9 229 74.7
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 7.4e-98 360.9 229 74.7
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 7.4e-98 360.9 222 78.8
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 9.7e-98 360.5 222 77.9
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.3e-97 360.1 227 74.4
Psat0s4061g0240 Pisum sativum HOM05D003516 ORTHO05D004068 2.8e-97 359.0 221 76.9
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 4.8e-97 358.2 226 76.1
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 5.3e-96 354.8 230 72.2
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 9.1e-96 354.0 229 74.2
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 1.2e-95 353.6 226 71.7
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 1.5e-95 353.2 226 75.7
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.5e-95 353.2 221 75.6
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 2.6e-95 352.4 229 74.2
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 2.6e-95 352.4 229 73.4
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 3.4e-95 352.1 223 72.6
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 1.0e-94 350.5 226 71.2
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 1.0e-94 350.5 226 71.2
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 1.0e-94 350.5 226 71.2
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 1.7e-94 349.7 223 72.6
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 1.7e-94 349.7 229 72.9
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 2.2e-94 349.4 226 70.8
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 2.2e-94 349.4 223 72.6
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 6.5e-94 347.8 229 70.7
Nn4g23327 Nelumbo nucifera HOM05D003516 ORTHO05D004068 6.5e-94 347.8 236 70.8
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 8.5e-94 347.4 214 75.2
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 1.1e-93 347.1 223 71.3
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 2.5e-93 345.9 227 70.9
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 5.5e-93 344.7 226 70.4
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 5.5e-93 344.7 223 73.1
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 5.5e-93 344.7 229 71.2
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 5.5e-93 344.7 229 69.4
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 9.4e-93 344.0 229 70.7
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 9.4e-93 344.0 223 74.0
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.2e-92 343.6 228 72.8
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 2.7e-92 342.4 229 70.3
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 8.0e-92 340.9 223 72.6
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 1.0e-91 340.5 229 69.9
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.4e-91 340.1 229 70.7
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 1.4e-91 340.1 229 71.2
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 1.8e-91 339.7 229 69.9
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 1.8e-91 339.7 227 70.5
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 2.3e-91 339.3 229 69.9
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 3.0e-91 339.0 229 69.9
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 6.7e-91 337.8 226 71.2
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 4.4e-90 335.1 229 69.4
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 7.4e-90 334.3 224 71.9
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 4.8e-89 331.6 224 72.8
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 6.3e-89 331.3 226 69.9
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 1.2e-87 327.0 225 65.8
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 3.5e-87 325.5 227 67.8
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 7.7e-87 324.3 224 70.1
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 1.0e-86 323.9 224 67.9
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 2.2e-86 322.8 230 66.1
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 5.5e-85 318.2 198 75.8
HanXRQChr17g0546731 Helianthus annuus HOM05D003516 ORTHO05D004068 1.2e-84 317.0 226 65.0
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.6e-84 316.6 227 65.6
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.0e-83 313.9 227 65.2
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.4e-83 313.5 228 66.7
Os07g0597100 Oryza sativa ssp. japonica HOM05D003516 ORTHO05D004068 1.8e-83 313.2 217 66.8
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 1.5e-82 310.1 226 65.9
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.5e-82 310.1 218 66.5
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 4.4e-82 308.5 219 70.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 6.3e-81 304.7 207 72.9
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 8.2e-81 304.3 227 65.6
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 4.5e-79 298.5 221 62.4
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 8.5e-78 294.3 230 62.6
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 4.7e-76 288.5 227 58.6
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 3.0e-75 285.8 224 62.5
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.7e-73 278.9 223 62.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.5e-71 271.9 167 79.0
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.0e-67 260.8 227 56.4
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 1.5e-61 240.4 218 52.3
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 3.4e-58 229.2 204 57.4
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 3.4e-58 229.2 206 57.3
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 5.8e-58 228.4 137 76.6
SalBow1G7786 Salvia bowleyana HOM05D003516 ORTHO05D004068 5.8e-58 228.4 147 72.1
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 3.7e-57 225.7 221 51.6
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 1.6e-55 220.3 210 53.8
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 2.3e-54 216.5 134 77.6
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 1.2e-50 204.1 232 43.5
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 1.7e-49 200.3 145 65.5
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 1.7e-46 190.3 116 75.0
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 1.5e-45 187.2 228 42.5
CSS0008212 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 3.1e-43 179.5 132 64.4
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 3.1e-43 179.5 153 58.2
SMO364G0931 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 2.4e-40 169.9 203 46.8
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 7.8e-39 164.9 98 75.5
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 4.7e-36 155.6 181 43.1
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 5.2e-35 152.1 233 38.2
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 2.2e-33 146.7 128 57.0
RcHm_v2.0_Chr4g0415101 Rosa chinensis HOM05D003516 ORTHO05D004068 2.1e-31 140.2 95 68.4
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 8.1e-20 101.7 64 70.3
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 7.6e-18 95.1 208 27.9
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 1.4e-16 90.9 47 87.2
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 2.7e-15 86.7 55 76.4
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.3e-12 77.8 56 67.9
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.0e-09 68.2 58 55.2
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 1.3e-09 67.8 46 67.4
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 3.5e-07 59.7 46 54.3
SalBow1G3591 Salvia bowleyana HOM05D020262 ORTHO05D004068 6.0e-07 58.9 61 47.5
SalBow8G5577 Salvia bowleyana HOM05D020262 ORTHO05D004068 6.0e-07 58.9 61 47.5


User provided reference genes

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