Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.0e-159 565.1 276 100.0
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.0e-114 417.2 271 74.5
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.3e-113 412.1 267 74.5
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 5.6e-113 411.4 267 73.8
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.4e-109 397.9 271 70.5
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.7e-107 392.5 271 69.7
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 3.5e-107 392.1 263 70.3
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.3e-106 390.2 267 71.5
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.3e-106 389.4 271 67.2
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 3.6e-104 382.1 271 65.7
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 8.0e-104 380.9 267 65.9
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 8.9e-103 377.5 270 67.0
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 7.5e-102 374.4 266 69.5
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.3e-101 373.6 272 65.8
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.7e-101 373.2 274 64.6
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.2e-101 372.9 264 66.3
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.9e-101 371.7 267 68.9
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 4.9e-101 371.7 267 67.0
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 4.9e-101 371.7 267 66.7
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.1e-100 370.5 268 65.3
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.2e-100 367.5 275 66.2
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.6e-99 366.7 275 66.5
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 2.7e-99 365.9 270 64.4
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.7e-99 365.9 265 66.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 6.0e-99 364.8 274 65.3
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 7.8e-99 364.4 270 64.1
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.0e-98 364.0 263 64.3
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.3e-98 363.6 261 66.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.7e-98 363.2 237 72.2
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 2.3e-98 362.8 267 64.0
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.6e-98 360.9 275 65.5
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.1e-97 360.5 268 63.4
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.5e-97 360.1 272 63.6
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.9e-97 359.8 258 66.3
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.9e-97 359.8 276 62.3
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.2e-96 357.1 265 63.0
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.6e-96 356.7 273 62.6
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.1e-96 356.3 276 62.0
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.1e-96 356.3 279 63.4
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 2.1e-96 356.3 259 64.9
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.8e-96 355.9 271 61.6
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 3.6e-96 355.5 265 62.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.1e-95 354.0 276 60.9
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.8e-95 353.2 272 61.0
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.8e-95 353.2 272 62.1
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.8e-95 353.2 268 61.9
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 2.3e-95 352.8 268 61.9
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.1e-95 352.4 272 61.4
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 3.1e-95 352.4 309 57.0
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 3.1e-95 352.4 267 63.7
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 5.2e-95 351.7 261 62.8
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 5.2e-95 351.7 267 64.4
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 5.2e-95 351.7 256 64.1
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.9e-95 350.9 274 65.0
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.5e-94 350.1 257 65.0
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.5e-94 350.1 274 64.6
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 2.0e-94 349.7 261 62.8
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.0e-94 349.7 267 62.2
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 3.4e-94 349.0 273 59.7
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 3.4e-94 349.0 274 64.6
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.4e-94 348.6 274 64.6
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.4e-94 348.6 268 64.9
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.4e-94 348.6 272 60.3
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 5.8e-94 348.2 266 63.5
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 5.8e-94 348.2 269 62.1
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 7.5e-94 347.8 268 61.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 7.5e-94 347.8 261 63.6
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 7.5e-94 347.8 256 62.5
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 9.9e-94 347.4 262 62.2
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.7e-93 346.7 268 61.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.2e-93 346.3 268 60.8
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 2.9e-93 345.9 276 58.7
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 3.7e-93 345.5 266 62.0
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 3.7e-93 345.5 265 61.9
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 3.7e-93 345.5 245 65.7
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 8.3e-93 344.4 266 62.4
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.1e-92 344.0 273 61.5
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.1e-92 344.0 253 63.2
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-92 344.0 256 61.3
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.1e-92 344.0 253 62.8
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-92 343.2 265 60.8
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 3.2e-92 342.4 257 63.8
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 5.4e-92 341.7 265 60.8
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 5.4e-92 341.7 265 60.8
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 9.2e-92 340.9 272 60.7
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.2e-91 340.5 266 62.0
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.6e-91 340.1 273 60.8
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.7e-91 339.3 268 60.8
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 2.7e-91 339.3 242 65.3
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.5e-91 339.0 266 62.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 3.5e-91 339.0 267 60.7
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 3.5e-91 339.0 268 60.4
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 2.3e-90 336.3 272 60.3
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 3.9e-90 335.5 267 60.3
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.6e-90 334.7 267 60.3
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 8.6e-90 334.3 270 58.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 7.3e-89 331.3 264 58.3
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.2e-88 330.5 274 58.0
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 5.2e-87 325.1 322 50.9
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 5.2e-87 325.1 262 59.2
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 5.2e-87 325.1 262 59.2
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.2e-86 323.9 257 62.6
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 2.0e-86 323.2 289 55.7
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 5.8e-86 321.6 296 53.0
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 9.9e-86 320.9 255 60.0
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.7e-85 320.1 262 58.0
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.2e-85 319.7 272 56.6
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 3.2e-84 315.8 190 73.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.7e-83 312.8 267 59.2
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 3.0e-82 309.3 267 57.7
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.1e-81 307.4 254 60.6
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 9.9e-78 294.3 240 58.3
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.2e-77 293.1 173 76.9
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 2.7e-75 286.2 190 67.9
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 6.0e-75 285.0 273 54.6
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 5.1e-74 282.0 218 61.5
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 2.2e-69 266.5 260 49.2
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 8.4e-69 264.6 215 57.7
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.1e-68 264.2 258 51.2
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.2e-68 262.7 215 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.5e-65 253.1 242 49.2
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 6.9e-63 245.0 205 57.1
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.6e-62 243.0 184 59.2
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.7e-61 240.4 232 47.4
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.1e-57 227.6 170 59.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.3e-57 226.1 262 45.8
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 9.0e-55 218.0 130 74.6
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 7.9e-51 204.9 130 71.5
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.3e-50 203.4 210 48.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.5e-49 200.7 180 53.3
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 9.7e-49 198.0 207 54.1
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.3e-48 197.6 156 61.5
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 6.3e-48 195.3 126 69.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.2e-45 186.8 276 38.4
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-44 184.5 283 38.9
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 4.3e-41 172.6 157 52.9
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.3e-40 171.0 111 68.5
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.4e-39 167.5 128 57.0
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.5e-38 164.1 232 38.4
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 7.4e-33 145.2 291 30.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.8e-31 140.6 127 54.3
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.7e-24 116.3 79 64.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.4e-23 113.6 117 53.8
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 5.9e-22 109.0 83 60.2
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.8e-18 97.4 60 75.0
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.2e-18 95.9 99 45.5
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 8.3e-08 62.0 67 41.8


User provided reference genes

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