Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.6e-158 561.6 303 100.0
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 4.5e-124 448.4 303 80.9
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.5e-122 442.6 303 78.5
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 3.6e-121 438.7 303 78.5
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 3.3e-119 432.2 303 77.6
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 9.4e-114 414.1 304 72.0
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 6.1e-113 411.4 303 74.3
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 2.2e-110 402.9 303 71.6
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.7e-108 396.0 301 71.1
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 3.0e-104 382.5 303 71.0
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.6e-103 379.4 303 70.6
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 5.7e-103 378.3 305 70.5
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 6.3e-94 348.2 233 77.7
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 2.0e-84 316.6 313 62.0
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 4.3e-82 308.9 345 55.4
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.1e-81 306.6 303 58.7
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 2.4e-77 293.1 313 53.4
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 4.1e-77 292.4 311 56.6
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.2e-76 290.8 307 54.7
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.0e-75 287.7 306 54.6
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 2.3e-75 286.6 338 50.3
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 9.5e-74 281.2 313 51.8
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 6.2e-73 278.5 312 55.1
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.4e-72 277.3 305 51.1
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.1e-72 276.2 314 50.6
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.8e-72 275.0 304 50.7
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 8.9e-72 274.6 316 50.6
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.4e-71 272.7 309 49.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 5.8e-71 271.9 334 50.0
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 9.9e-71 271.2 312 52.2
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 9.9e-71 271.2 334 48.5
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.9e-71 271.2 332 49.1
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 9.9e-71 271.2 309 53.1
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 8.3e-70 268.1 307 49.8
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.9e-69 266.9 327 53.5
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.9e-69 266.9 305 51.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 5.4e-69 265.4 335 48.1
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 9.2e-69 264.6 226 61.5
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.2e-68 264.2 332 48.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.8e-68 261.5 303 49.8
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.3e-67 260.8 303 54.1
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.3e-67 260.8 324 49.1
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.9e-67 259.2 324 49.1
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 5.1e-67 258.8 313 53.4
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 5.1e-67 258.8 246 56.5
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 5.1e-67 258.8 324 49.1
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.1e-66 257.7 358 45.8
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.9e-66 256.9 329 47.7
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 2.5e-66 256.5 303 54.1
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 9.5e-66 254.6 250 56.8
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.2e-65 254.2 316 46.5
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 4.7e-65 252.3 309 50.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 4.7e-65 252.3 303 48.5
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 4.0e-64 249.2 303 45.2
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 8.9e-64 248.1 316 47.2
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 8.9e-64 248.1 303 47.9
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 5.8e-63 245.4 334 49.7
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 7.6e-63 245.0 351 44.7
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.7e-62 243.8 312 49.0
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 2.2e-62 243.4 239 55.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.9e-62 243.0 303 44.6
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.9e-62 242.3 310 46.1
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 6.4e-62 241.9 317 49.2
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 6.4e-62 241.9 308 46.8
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.4e-61 240.7 321 46.4
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.9e-61 240.4 323 45.8
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.9e-61 240.4 309 46.6
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 7.1e-61 238.4 322 45.3
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 9.2e-61 238.0 328 46.0
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.7e-60 236.5 320 45.6
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.5e-60 236.1 302 46.4
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 7.8e-60 235.0 309 45.6
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.0e-59 234.6 238 55.0
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.3e-59 234.2 329 45.0
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.3e-59 233.4 310 45.5
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.3e-59 233.4 314 44.3
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 5.1e-59 232.3 322 45.7
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.1e-58 231.1 321 46.4
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.5e-58 230.7 327 42.2
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.5e-58 230.7 319 44.8
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 3.3e-58 229.6 305 50.8
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 5.6e-58 228.8 372 41.9
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 7.3e-58 228.4 310 50.6
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 9.6e-58 228.0 320 45.3
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 2.1e-57 226.9 315 47.3
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.1e-57 226.9 306 46.7
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.1e-57 226.9 323 43.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 6.2e-57 225.3 303 46.2
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 6.2e-57 225.3 314 45.2
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 6.2e-57 225.3 314 45.2
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 6.2e-57 225.3 310 49.0
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 8.1e-57 224.9 303 44.2
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 1.4e-56 224.2 325 45.2
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.4e-56 223.4 304 48.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 4.0e-56 222.6 313 46.0
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.2e-55 221.1 321 43.6
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-55 220.7 317 44.5
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 1.5e-55 220.7 317 44.5
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 2.0e-55 220.3 306 44.4
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 7.6e-55 218.4 318 43.1
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 7.6e-55 218.4 306 44.1
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 7.6e-55 218.4 309 44.7
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 9.9e-55 218.0 332 43.4
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 9.9e-55 218.0 332 43.4
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 9.9e-55 218.0 332 43.4
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.7e-54 217.2 319 43.6
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 4.9e-54 215.7 297 47.5
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 8.4e-54 214.9 228 52.2
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.4e-53 214.2 245 52.2
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.2e-53 212.6 315 42.5
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.2e-52 211.1 316 43.7
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 1.2e-52 211.1 324 41.0
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.1e-52 210.3 314 43.0
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 2.7e-52 209.9 315 42.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 4.6e-52 209.1 331 41.1
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.7e-51 207.2 304 44.1
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.3e-51 206.8 313 43.8
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 7.3e-50 201.8 311 43.4
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 4.8e-49 199.1 308 42.2
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 3.2e-45 186.4 320 41.6
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 5.4e-45 185.7 277 43.3
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.3e-43 181.0 310 42.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.1e-42 177.9 304 37.2
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 2.8e-41 173.3 385 33.8
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.8e-41 173.3 332 36.7
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 8.1e-41 171.8 250 42.4
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.2e-39 167.9 280 41.1
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 7.1e-37 158.7 305 38.4
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.2e-36 157.9 335 37.9
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 2.1e-36 157.1 155 63.9
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.3e-35 154.5 315 36.2
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.1e-33 147.1 146 57.5
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 8.2e-33 145.2 179 55.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 4.9e-30 136.0 153 52.9
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-29 133.7 314 35.0
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 2.5e-29 133.7 314 35.0
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 8.2e-25 118.6 369 30.1
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.2e-25 118.6 374 28.9
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.0e-23 114.0 93 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.8e-22 109.8 343 28.9
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.5e-22 108.6 370 28.4
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.9e-21 107.5 278 33.5
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 5.5e-21 105.9 337 28.2
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.6e-20 103.2 362 28.5
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.6e-20 103.2 359 28.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 3.9e-19 99.8 166 41.6
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.5e-18 97.8 131 45.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.9e-16 89.0 321 25.9
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 5.5e-13 79.3 218 32.6
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 3.6e-12 76.6 75 58.7
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.7e-12 76.3 54 72.2
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.4e-11 74.7 125 34.4
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.4e-11 74.7 85 45.9
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 9.7e-10 68.6 78 67.9
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.3e-09 65.9 80 48.8
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.4e-08 64.7 247 24.3
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.4e-08 64.7 170 28.8
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.2e-07 61.6 75 41.3
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-07 61.2 46 60.9
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.4e-07 60.1 257 23.7
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 3.8e-06 56.6 108 39.8
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 8.5e-06 55.5 91 39.6


User provided reference genes

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