Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 4.5e-32 140.6 68 100.0
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 8.2e-26 119.8 68 82.4
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 1.1e-25 119.4 68 82.4
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.1e-25 117.9 68 80.9
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.1e-25 117.9 68 80.9
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.3e-25 117.1 68 80.9
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 7.0e-25 116.7 68 80.9
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 1.6e-24 115.5 67 80.6
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 1.6e-24 115.5 64 82.8
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 2.0e-24 115.2 62 85.5
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 4.5e-24 114.0 68 79.4
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 1.0e-23 112.8 64 84.4
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 1.7e-23 112.1 66 78.8
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 2.2e-23 111.7 68 80.9
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 2.9e-23 111.3 68 79.4
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 2.9e-23 111.3 60 86.7
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 3.8e-23 110.9 62 82.3
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 3.8e-23 110.9 59 83.1
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 3.8e-23 110.9 60 86.7
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.8e-23 110.9 71 77.5
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.8e-23 110.9 71 77.5
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 1.1e-22 109.4 68 75.0
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 1.1e-22 109.4 67 77.6
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 1.9e-22 108.6 59 81.4
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 1.9e-22 108.6 68 75.0
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 2.5e-22 108.2 61 83.6
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 2.5e-22 108.2 61 83.6
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 3.2e-22 107.8 68 75.0
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 3.2e-22 107.8 64 79.7
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 4.2e-22 107.5 64 78.1
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 4.2e-22 107.5 67 73.1
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 4.2e-22 107.5 67 74.6
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 4.2e-22 107.5 67 74.6
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 5.5e-22 107.1 64 78.1
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 5.5e-22 107.1 64 78.1
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 5.5e-22 107.1 67 77.6
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 7.2e-22 106.7 66 77.3
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 9.4e-22 106.3 64 78.1
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 9.4e-22 106.3 64 78.1
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 9.4e-22 106.3 64 75.0
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 9.4e-22 106.3 56 85.7
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 9.4e-22 106.3 69 76.8
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 1.2e-21 105.9 64 76.6
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 1.2e-21 105.9 62 79.0
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 1.2e-21 105.9 61 78.7
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 1.6e-21 105.5 64 75.0
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 2.1e-21 105.1 64 76.6
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 79.7
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 2.7e-21 104.8 53 90.6
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 4.7e-21 104.0 64 75.0
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 4.7e-21 104.0 64 75.0
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 4.7e-21 104.0 64 75.0
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 4.7e-21 104.0 62 77.4
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 4.7e-21 104.0 61 78.7
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 6.1e-21 103.6 63 76.2
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 6.1e-21 103.6 63 76.2
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 6.1e-21 103.6 64 75.0
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 8.0e-21 103.2 58 81.0
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 8.0e-21 103.2 58 81.0
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 8.0e-21 103.2 64 76.6
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 8.0e-21 103.2 58 82.8
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 8.0e-21 103.2 64 75.0
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 1.0e-20 102.8 62 77.4
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 1.0e-20 102.8 60 78.3
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 2.3e-20 101.7 68 73.5
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 5.2e-20 100.5 57 78.9
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 5.2e-20 100.5 60 76.7
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 6.8e-20 100.1 53 84.9
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 8.8e-20 99.8 64 73.4
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 1.5e-19 99.0 60 75.0
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.0e-19 98.6 58 79.3
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 4.4e-19 97.4 55 78.2
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 5.7e-19 97.1 59 74.6
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 2.2e-18 95.1 57 78.9
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 6.3e-18 93.6 53 81.1
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 6.3e-18 93.6 55 80.0
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 1.4e-17 92.4 63 69.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 1.7e-15 85.5 62 64.5
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 1.9e-14 82.0 64 56.2
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 2.5e-14 81.6 67 59.7
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 5.5e-14 80.5 68 61.8
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 2.1e-13 78.6 54 68.5
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 4.0e-12 74.3 47 76.6
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 3.4e-11 71.2 48 75.0
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 3.1e-09 64.7 37 81.1
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 3.1e-09 64.7 53 54.7
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 5.4e-09 63.9 57 49.1
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 2.0e-08 62.0 36 83.3
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 3.5e-08 61.2 36 80.6
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 3.5e-08 61.2 36 80.6
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 5.9e-08 60.5 46 56.5
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 5.9e-08 60.5 56 46.4
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 5.9e-08 60.5 56 46.4
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 2.9e-07 58.2 35 71.4
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 1.1e-06 56.2 36 75.0


User provided reference genes

Program Settings