Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1758.4 1018 100.0
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1290.0 1034 71.5
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1268.8 1039 71.6
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1258.4 1035 71.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1254.6 1025 71.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1253.0 1040 69.6
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1249.2 1040 69.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1248.8 1034 72.9
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1228.0 974 71.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1217.2 1024 70.6
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1207.6 1059 68.7
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1196.8 1042 68.7
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1172.9 860 75.5
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1141.7 1057 63.4
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1139.8 1068 62.7
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1133.2 1042 64.8
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1124.0 1065 63.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1108.6 1038 62.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1103.6 1030 63.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1038 61.8
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1090.1 1029 60.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1087.4 1045 63.8
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1080.1 1025 61.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1075.5 1042 60.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.4e-311 1072.8 1037 63.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 2.8e-311 1072.0 1064 60.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.0e-309 1065.8 1049 59.8
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 3.4e-309 1065.1 1059 60.0
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 4.5e-309 1064.7 1025 62.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1058 61.3
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 9.3e-307 1057.0 1067 59.4
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.7e-305 1050.8 1056 62.7
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 8.7e-305 1050.4 1045 59.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 3.3e-304 1048.5 1063 61.1
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.8e-303 1044.6 1030 64.3
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 4.0e-302 1041.6 1062 61.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.4e-301 1038.5 1057 60.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.0e-300 1036.9 1067 59.3
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 3.8e-300 1035.0 1023 61.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 4.9e-300 1034.6 1096 58.9
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.0e-297 1026.9 1025 58.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1010 60.6
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1065 61.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 5.1e-297 1024.6 1062 60.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.1e-296 1023.5 1041 63.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-296 1022.7 1035 60.6
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 1034 59.9
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.1e-294 1016.9 1100 59.3
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.8e-294 1016.1 883 63.9
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.4e-294 1015.8 1023 58.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.1e-294 1015.4 1025 60.2
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 6.1e-290 1001.1 954 62.4
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 7.9e-290 1000.7 1087 56.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.0e-289 1000.3 1199 53.6
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.1e-288 996.9 1040 59.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.3e-287 993.4 1030 57.2
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 6.3e-287 991.1 1089 55.1
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.5e-285 986.5 950 59.8
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.5e-285 986.5 879 63.9
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.0e-285 986.1 994 58.5
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.6e-285 985.7 1058 57.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 7.7e-285 984.2 1036 57.3
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.3e-284 983.4 1052 56.5
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.9e-284 982.2 1039 58.4
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.0e-284 981.5 1036 58.5
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 8.5e-284 980.7 1050 58.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 5.5e-283 978.0 1076 57.9
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.2e-283 977.6 1010 57.3
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 3.3e-280 968.8 1042 56.6
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.3e-279 966.8 907 61.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 3.7e-279 965.3 1008 57.2
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 3.1e-278 962.2 1024 57.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 3.4e-277 958.7 1019 56.8
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-275 953.7 1030 58.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 7.2e-275 951.0 1055 56.3
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 4.7e-274 948.3 912 60.1
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.0e-273 947.2 1046 56.2
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.0e-272 943.0 900 62.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.2e-271 939.5 874 61.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.4e-270 936.0 860 60.1
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.0e-269 932.9 1020 57.5
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.9e-267 926.4 1024 57.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-266 923.3 1032 54.7
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 8.0e-266 921.0 1041 54.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 4.2e-259 898.7 923 58.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.2e-256 890.6 1028 55.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.3e-255 887.1 1030 55.0
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.4e-254 883.6 1033 53.9
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.4e-254 882.9 1006 54.1
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.0e-253 879.8 838 58.8
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.9e-252 875.9 847 59.3
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.1e-246 855.9 1056 50.3
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.5e-243 847.0 890 57.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 6.4e-239 831.6 846 57.7
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 8.3e-239 831.2 1078 51.7
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.1e-238 830.9 1046 49.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.4e-238 830.5 1032 52.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.9e-227 793.5 827 59.3
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.7e-220 770.4 1066 48.0
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.6e-220 768.5 612 67.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.8e-210 736.5 716 60.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.2e-207 726.9 576 68.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.7e-204 714.9 1001 48.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-199 701.0 607 64.7
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.1e-193 679.9 839 48.9
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 9.6e-187 658.3 800 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.2e-184 651.4 925 43.8
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.7e-173 613.6 988 41.5
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 4.2e-166 589.7 549 60.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.0e-163 580.9 740 50.9
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.9e-159 567.0 493 67.1
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.8e-154 550.4 856 41.1
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.7e-154 550.1 601 57.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.6e-149 533.5 935 40.5
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-143 515.0 648 49.2
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 8.6e-135 485.7 359 72.7
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.1e-134 485.3 839 38.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.6e-103 379.8 759 35.8
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-92 345.9 351 57.5
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.9e-86 325.1 650 38.8
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.2e-81 307.8 621 36.6
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.1e-81 306.6 308 56.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.8e-68 265.4 586 39.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.6e-67 261.5 738 30.4
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 3.4e-67 261.2 267 62.2
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-61 242.7 200 66.5
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.9e-51 207.2 209 57.4
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.1e-47 194.1 224 51.3
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 3.8e-42 177.9 158 66.5
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 4.2e-41 174.5 271 50.2
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.0e-35 155.6 122 72.1
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.9e-33 149.1 159 55.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 3.2e-25 121.7 132 53.8
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.4e-20 106.3 58 86.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 9.1e-20 103.6 84 58.3
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.3e-18 99.8 51 92.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-16 93.2 80 60.0
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.4e-12 79.0 221 44.8
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.0e-12 77.4 235 37.0
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.2e-11 76.6 223 40.4
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 4.3e-09 68.2 37 86.5
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 7.3e-09 67.4 51 70.6
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 9.5e-09 67.0 51 70.6
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 9.5e-09 67.0 52 69.2
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.2e-08 66.6 45 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.2e-08 66.6 45 66.7
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 3.6e-08 65.1 51 66.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 4.7e-08 64.7 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 4.7e-08 64.7 45 64.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.0e-07 63.5 45 62.2
Psat3g037200 Pisum sativum HOM05D001007 ORTHO05D012393 1.0e-07 63.5 51 66.7
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 2.3e-07 62.4 51 64.7
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.5e-06 59.7 51 62.7


User provided reference genes

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