Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 1.7e-114 416.8 363 100.0
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 2.7e-67 260.0 206 71.4
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 4.3e-65 252.7 208 68.8
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 9.4e-60 235.0 179 70.9
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.6e-57 226.9 217 65.4
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.4e-57 226.1 196 64.3
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.4e-57 226.1 216 63.0
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.4e-55 221.1 206 63.1
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 4.1e-55 219.5 185 70.3
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 5.3e-55 219.2 185 69.7
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 8.0e-51 205.3 141 75.2
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 3.3e-49 199.9 211 60.2
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 5.5e-44 182.6 193 60.1
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 7.2e-36 155.6 173 50.3
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 2.1e-35 154.1 184 49.5
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 8.0e-35 152.1 189 46.6
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 6.8e-34 149.1 181 47.0
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 2.6e-33 147.1 176 48.3
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 4.4e-33 146.4 186 44.6
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 5.7e-33 146.0 187 44.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 1.3e-32 144.8 192 46.9
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.7e-32 144.4 186 44.6
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.7e-32 144.4 185 45.9
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.2e-32 144.1 185 47.0
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 2.8e-32 143.7 176 45.5
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 6.3e-32 142.5 200 44.0
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 8.3e-32 142.1 162 49.4
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 2.4e-31 140.6 165 50.3
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 5.4e-31 139.4 197 43.7
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.6e-30 137.9 164 47.6
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 2.7e-30 137.1 200 46.0
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 4.5e-30 136.3 186 42.5
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 4.5e-30 136.3 199 42.7
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.3e-29 134.8 174 45.4
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 3.8e-29 133.3 187 43.9
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.1e-28 131.7 177 45.8
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 4.2e-28 129.8 197 41.6
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.2e-28 129.8 168 48.2
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 7.2e-28 129.0 178 44.9
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.2e-27 128.3 175 44.6
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.2e-27 128.3 175 44.6
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 1.6e-27 127.9 179 43.0
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.0e-26 125.2 182 39.6
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 5.2e-26 122.9 175 42.9
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 6.8e-26 122.5 125 52.8
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 6.8e-26 122.5 182 41.8
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 2.0e-25 120.9 194 41.2
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 4.4e-25 119.8 176 42.0
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 4.4e-25 119.8 193 36.3
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 4.4e-25 119.8 183 42.6
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 7.5e-25 119.0 143 46.2
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 1.3e-24 118.2 184 41.3
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 2.2e-24 117.5 182 36.8
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.2e-24 117.5 162 45.7
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 8.3e-24 115.5 162 40.7
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.1e-23 115.2 162 40.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.4e-23 114.8 168 41.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.1e-23 113.6 162 40.1
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.2e-22 111.7 179 41.3
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 1.6e-22 111.3 190 42.1
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 4.5e-22 109.8 191 40.3
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.0e-21 108.6 182 36.8
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.7e-21 107.8 168 38.7
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 2.9e-21 107.1 200 36.5
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 3.9e-21 106.7 191 41.9
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 6.6e-21 105.9 188 42.6
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 6.6e-21 105.9 188 42.6
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 8.6e-21 105.5 179 39.7
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.5e-20 104.8 199 38.2
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.9e-20 104.4 173 40.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.9e-20 104.4 187 34.2
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 4.3e-20 103.2 196 32.1
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 5.6e-20 102.8 177 35.6
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 9.5e-20 102.1 174 37.9
Glyma.12G201200 Glycine max HOM05D007281 ORTHO05D009241 1.2e-19 101.7 71 71.8
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.6e-19 101.3 177 35.0
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 2.1e-19 100.9 191 41.4
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 2.8e-19 100.5 184 35.3
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.7e-19 99.8 169 34.3
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 3.1e-18 97.1 177 38.4
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.5e-17 94.7 181 35.9
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.3e-16 91.7 192 39.1
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 3.2e-15 87.0 168 35.1
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 2.0e-14 84.3 178 28.7
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 6.0e-14 82.8 154 37.0
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 7.8e-14 82.4 171 35.7
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.0e-13 82.0 154 38.3
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 1.3e-13 81.6 99 48.5
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 1.3e-13 81.6 125 36.8
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 5.0e-13 79.7 114 41.2
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.1e-12 78.6 126 38.9
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.1e-12 78.6 126 38.9
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.1e-11 74.3 126 36.5
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 2.8e-11 73.9 126 36.5
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.8e-10 71.2 125 36.0
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 5.2e-10 69.7 179 29.1
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 8.9e-10 68.9 164 33.5
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 3.4e-09 67.0 100 41.0
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 4.4e-09 66.6 157 31.2
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 3.7e-08 63.5 161 29.8
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 3.2e-07 60.5 120 30.0


User provided reference genes

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