Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.7e-233 812.4 426 100.0
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.3e-205 718.4 439 85.6
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 1.1e-165 587.0 440 71.4
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 9.7e-165 583.9 432 69.4
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 6.3e-164 581.3 432 68.1
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 1.7e-161 573.2 432 66.7
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 2.4e-155 552.7 432 68.5
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.5e-141 506.9 443 61.2
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 2.9e-129 466.1 371 68.2
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 2.2e-124 449.9 443 55.3
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 2.4e-115 419.9 352 61.6
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.1e-112 411.0 282 71.3
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 4.3e-112 409.1 381 57.2
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.8e-110 403.7 441 52.8
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 3.7e-108 396.0 437 51.5
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 6.4e-108 395.2 398 55.5
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 7.0e-107 391.7 440 52.5
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 9.2e-107 391.3 443 51.2
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 2.0e-106 390.2 436 53.4
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.3e-105 387.5 438 52.5
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.1e-104 384.4 435 50.8
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.1e-104 384.4 432 51.9
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.6e-104 382.1 433 52.0
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 7.3e-104 381.7 394 51.5
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 2.8e-103 379.8 435 50.8
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.4e-102 377.5 439 51.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 5.2e-102 375.6 440 51.8
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 6.8e-102 375.2 415 51.3
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 6.8e-102 375.2 394 51.5
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.5e-101 374.0 431 51.0
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.6e-101 373.2 438 50.7
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 7.5e-101 371.7 432 50.2
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 9.8e-101 371.3 432 50.2
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 9.8e-101 371.3 432 50.7
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 1.7e-100 370.5 431 50.8
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.7e-100 370.5 384 53.1
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.9e-100 369.8 450 50.2
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 3.7e-100 369.4 435 49.4
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 8.3e-100 368.2 435 50.1
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.1e-99 367.9 432 50.0
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 9.2e-99 364.8 444 48.9
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.5e-98 362.8 443 49.4
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 1.3e-97 360.9 410 50.5
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 3.3e-96 356.3 444 47.5
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 5.6e-96 355.5 449 49.4
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 2.1e-95 353.6 426 49.3
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 4.7e-95 352.4 434 48.2
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 2.3e-94 350.1 372 52.4
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.3e-94 350.1 391 51.4
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.3e-94 350.1 319 58.3
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 6.8e-94 348.6 443 48.5
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 1.5e-93 347.4 430 48.8
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 4.4e-93 345.9 437 47.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.7e-92 344.0 387 50.9
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 2.9e-92 343.2 387 51.4
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 3.7e-92 342.8 431 47.8
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 8.3e-92 341.7 432 47.5
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.9e-91 340.5 431 45.9
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 2.4e-91 340.1 427 46.6
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 3.2e-91 339.7 392 48.2
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.1e-91 339.3 436 47.5
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 5.4e-91 339.0 428 46.7
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 2.1e-90 337.0 382 50.8
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 4.6e-90 335.9 425 45.9
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 6.0e-90 335.5 392 47.7
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.0e-89 334.7 434 46.8
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 3.9e-89 332.8 431 45.9
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 1.5e-88 330.9 436 45.0
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.5e-88 330.9 382 50.5
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 2.5e-88 330.1 431 46.2
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.3e-88 329.7 392 49.0
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 6.2e-87 325.5 456 43.9
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.8e-86 323.9 391 47.3
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.8e-86 323.9 431 44.8
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.8e-86 323.9 432 44.7
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 6.8e-86 322.0 428 45.3
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 2.6e-85 320.1 458 42.6
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 3.4e-85 319.7 389 48.8
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 7.6e-85 318.5 414 46.6
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.8e-84 316.2 430 44.4
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.1e-83 314.7 437 43.9
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 6.0e-82 308.9 385 45.7
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.9e-80 303.9 519 41.0
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 3.3e-80 303.1 317 54.6
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 9.9e-77 291.6 336 50.0
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 2.9e-76 290.0 300 52.3
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 4.9e-76 289.3 438 44.1
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.2e-74 284.6 337 49.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 6.0e-74 282.3 329 49.2
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 1.6e-71 274.2 381 43.8
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 6.4e-68 262.3 549 36.6
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.9e-67 260.8 359 44.3
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 9.3e-67 258.5 376 41.5
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 3.5e-66 256.5 429 40.8
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.4e-62 243.8 333 45.0
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 4.0e-62 243.0 343 46.1
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 5.1e-57 226.1 218 57.8
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.4e-54 217.2 203 56.7
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 5.1e-49 199.5 396 38.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.8e-46 191.0 251 44.2
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.1e-38 165.2 383 33.2
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.2e-37 161.8 383 32.1
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.7e-36 157.9 198 43.9
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 6.5e-36 156.0 383 32.4
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.6e-34 151.4 439 30.5
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 3.3e-32 143.7 366 30.9
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 3.0e-25 120.6 105 59.0
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.4e-22 111.7 407 26.5
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 2.2e-20 104.4 167 39.5
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 3.8e-20 103.6 96 59.4
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 9.4e-19 99.0 119 43.7
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.6e-18 98.2 150 42.0
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.5e-16 91.7 185 37.3
Medtr2g093870 Medicago truncatula HOM05D006045 ORTHO05D007678 2.0e-16 91.3 79 60.8
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 4.4e-16 90.1 126 43.7
Medtr4g078800 Medicago truncatula HOM05D006045 ORTHO05D007678 5.4e-14 83.2 155 35.5
Glyma.07G135200 Glycine max HOM05D006045 ORTHO05D007678 4.5e-13 80.1 66 56.1
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 1.3e-12 78.6 56 64.3
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 3.8e-12 77.0 73 60.3
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.2e-11 73.9 102 43.1
Glyma.10G191650 Glycine max HOM05D006045 ORTHO05D007678 1.2e-10 72.0 87 50.6
arahy.Tifrunner.gnm1.ann1.AC67KC Arachis hypogaea HOM05D006045 ORTHO05D007678 3.0e-09 67.4 44 68.2
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 9.8e-08 62.4 95 37.9
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 9.1e-06 55.8 155 33.5


User provided reference genes

Program Settings