Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 3.1e-119 431.8 212 100.0
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 3.6e-88 328.6 176 92.6
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 3.0e-82 308.9 176 85.2
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 5.6e-81 304.7 174 84.5
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.6e-80 303.1 174 82.8
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.6e-80 302.0 176 83.0
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 6.2e-80 301.2 173 84.4
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 2.4e-79 299.3 174 83.3
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 2.4e-79 299.3 174 82.2
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 3.1e-79 298.9 174 82.2
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 2.6e-78 295.8 173 82.1
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.3e-77 293.5 176 80.7
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.7e-77 293.1 174 79.3
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 5.4e-76 288.1 173 79.8
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 5.4e-76 288.1 176 79.5
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 9.3e-76 287.3 173 80.9
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.2e-75 287.0 173 78.6
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-75 287.0 173 78.6
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.2e-75 287.0 175 79.4
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.6e-75 286.6 176 80.1
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 1.6e-75 286.6 173 80.3
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.1e-75 286.2 173 78.6
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 2.7e-75 285.8 173 80.9
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.5e-75 285.4 176 79.5
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 4.6e-75 285.0 176 78.4
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 7.9e-75 284.3 165 81.8
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-74 283.9 173 77.5
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-74 283.9 173 76.9
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 3.0e-74 282.3 173 77.5
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 5.1e-74 281.6 182 75.8
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 5.1e-74 281.6 176 76.7
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 6.7e-74 281.2 173 77.5
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 6.7e-74 281.2 177 78.0
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.5e-73 280.0 176 76.7
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.5e-73 280.0 176 76.1
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.9e-73 279.6 176 77.8
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 1.9e-73 279.6 177 77.4
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 5.6e-73 278.1 172 77.9
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 5.6e-73 278.1 176 76.1
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 5.6e-73 278.1 172 79.1
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 9.6e-73 277.3 172 76.2
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 9.6e-73 277.3 174 75.9
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 2.1e-72 276.2 176 76.1
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 4.8e-72 275.0 173 78.6
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 8.1e-72 274.2 177 75.7
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 8.1e-72 274.2 176 75.0
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 8.1e-72 274.2 177 76.3
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.8e-71 273.1 176 73.3
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 3.1e-71 272.3 177 75.1
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 3.1e-71 272.3 177 75.1
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 4.0e-71 271.9 177 75.1
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 4.0e-71 271.9 193 70.5
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 5.3e-71 271.6 177 73.4
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 6.9e-71 271.2 176 73.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 6.9e-71 271.2 174 74.1
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 9.0e-71 270.8 177 74.0
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 9.0e-71 270.8 178 74.2
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.5e-70 270.0 173 72.8
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 2.0e-70 269.6 173 75.7
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 2.0e-70 269.6 176 75.0
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 2.6e-70 269.2 172 76.2
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 5.8e-70 268.1 177 74.0
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.0e-69 267.3 173 74.0
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.0e-69 267.3 171 73.7
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.3e-69 266.9 177 74.6
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.3e-69 266.9 176 72.7
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.3e-69 266.9 176 75.0
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 2.9e-69 265.8 176 71.6
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 2.9e-69 265.8 177 72.9
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.9e-69 265.8 176 72.2
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.8e-69 265.4 174 71.8
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.5e-69 264.6 176 72.2
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.9e-68 263.1 175 73.7
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.1e-67 259.6 178 71.3
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 4.6e-67 258.5 207 62.3
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.0e-66 257.3 176 70.5
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.3e-66 256.9 195 67.2
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 3.0e-66 255.8 173 69.4
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 3.9e-66 255.4 169 71.6
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 5.1e-66 255.0 178 70.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 5.1e-66 255.0 175 70.3
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 8.7e-66 254.2 175 70.3
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.5e-65 253.4 176 71.6
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.5e-65 253.4 159 76.1
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 2.5e-65 252.7 181 70.2
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 2.5e-65 252.7 179 69.3
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 7.4e-65 251.1 178 69.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 9.6e-65 250.8 178 69.1
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 4.8e-64 248.4 178 69.1
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 1.1e-63 247.3 176 67.6
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 1.8e-63 246.5 178 67.4
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.8e-63 246.5 172 70.3
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 4.1e-63 245.4 172 69.2
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 2.0e-62 243.0 172 70.3
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 3.4e-62 242.3 170 68.8
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.7e-61 240.0 147 76.9
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 5.5e-60 235.0 173 68.2
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 5.3e-55 218.4 171 62.0
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.5e-54 216.9 171 63.2
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.5e-54 216.9 172 64.0
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 2.7e-51 206.1 192 54.7
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 6.7e-50 201.4 185 53.5
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 1.7e-48 196.8 161 60.2
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.8e-47 193.4 120 73.3
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.1e-44 184.1 213 48.4
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.0e-42 177.6 167 54.5
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 3.9e-42 175.6 173 49.1
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 5.7e-33 145.2 95 71.6
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 2.5e-28 129.8 80 80.0
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 6.8e-26 121.7 80 77.5
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.3e-24 114.8 74 78.4
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.7e-21 107.1 172 37.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.2e-17 94.4 171 35.1
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 2.8e-16 89.7 63 71.4
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.9e-16 89.0 55 74.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 2.4e-15 86.7 52 84.6
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 3.1e-15 86.3 52 82.7
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 7.0e-15 85.1 52 82.7
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 7.0e-15 85.1 52 82.7
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 9.2e-15 84.7 52 82.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 1.5e-09 67.4 43 81.4
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.7e-09 65.5 72 51.4
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.7e-08 63.9 72 50.0
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.6e-06 57.4 87 43.7
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 4.6e-06 55.8 54 63.0


User provided reference genes

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