Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 7.4e-130 467.2 239 100.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.7e-92 342.4 244 75.4
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.0e-90 336.3 244 74.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 7.7e-87 324.3 246 75.2
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.1e-85 320.5 235 73.6
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.2e-84 317.0 217 79.7
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 4.0e-83 312.0 238 74.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.4e-82 308.9 236 70.8
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.8e-81 305.8 277 61.7
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.1e-76 289.7 235 69.4
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 3.0e-75 285.8 234 68.4
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 5.8e-74 281.6 236 68.2
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 9.2e-72 274.2 214 69.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.1e-67 260.8 235 62.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.3e-67 259.6 235 62.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 4.0e-67 258.8 235 62.6
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.4e-66 255.8 235 61.3
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.4e-66 255.4 241 62.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 4.4e-66 255.4 225 63.6
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.4e-66 255.4 235 63.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 5.8e-66 255.0 236 62.7
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 7.5e-66 254.6 231 62.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.3e-65 253.8 235 63.8
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 1.3e-65 253.8 225 64.4
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.9e-65 252.7 235 63.0
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.9e-65 251.9 225 63.6
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 4.9e-65 251.9 225 64.0
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 6.4e-65 251.5 235 61.7
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.2e-64 249.2 235 61.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 5.4e-64 248.4 231 62.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.6e-63 246.9 248 58.5
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 2.7e-63 246.1 235 60.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.5e-63 245.7 235 61.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.6e-63 245.4 225 62.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.0e-62 244.2 225 62.7
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.9e-62 242.3 240 58.3
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.0e-62 241.9 244 59.0
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 8.6e-62 241.1 225 60.9
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.5e-61 239.6 235 58.7
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.3e-61 239.2 237 59.1
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.3e-61 238.8 235 60.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 4.3e-61 238.8 235 59.6
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.6e-61 238.4 237 59.5
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-60 237.3 225 62.2
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.2e-60 237.3 235 59.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.4e-59 233.8 238 57.1
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.3e-59 233.0 235 59.1
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.1e-59 232.6 225 61.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.1e-59 232.6 234 60.3
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.0e-59 232.3 226 60.6
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 5.2e-59 231.9 233 59.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 6.8e-59 231.5 235 56.2
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.9e-59 231.1 225 60.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-58 230.3 222 59.9
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.0e-58 229.9 225 60.4
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.6e-58 229.6 189 67.7
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.6e-58 229.6 237 55.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 3.4e-58 229.2 234 60.3
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-58 228.0 225 59.1
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.3e-57 227.3 251 54.6
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.7e-57 226.9 315 48.6
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 2.9e-57 226.1 236 55.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 4.9e-57 225.3 243 57.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.9e-57 225.3 212 60.4
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.3e-57 224.6 211 61.6
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.3e-57 224.6 211 61.6
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-56 223.0 211 61.6
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.2e-56 222.6 212 59.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 7.1e-56 221.5 251 52.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.1e-55 219.9 197 62.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.7e-55 219.5 204 60.8
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 7.8e-55 218.0 210 59.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.7e-54 216.9 204 60.3
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 3.0e-54 216.1 204 59.3
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 3.0e-54 216.1 328 44.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 3.9e-54 215.7 207 61.4
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 8.6e-54 214.5 157 77.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 8.6e-54 214.5 226 54.4
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.9e-53 213.4 197 60.4
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.5e-53 213.0 198 61.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 4.3e-53 212.2 211 58.8
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 5.6e-53 211.8 237 57.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.6e-53 211.8 173 68.8
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 9.5e-53 211.1 235 54.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.5e-53 211.1 203 58.6
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.5e-53 211.1 203 58.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 2.8e-52 209.5 194 60.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 8.1e-52 208.0 216 58.3
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-51 206.8 168 66.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.1e-51 206.1 235 53.6
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 8.9e-51 204.5 214 57.0
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 8.9e-51 204.5 217 56.2
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.6e-50 203.0 236 55.9
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.6e-50 203.0 234 52.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.4e-50 202.6 203 58.1
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 7.6e-50 201.4 204 58.3
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.2e-49 199.9 204 55.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.2e-49 199.9 206 55.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.9e-49 199.5 182 61.5
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.8e-49 199.1 223 54.3
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.8e-49 199.1 213 55.4
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 3.8e-49 199.1 208 55.3
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.4e-49 198.4 205 55.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.4e-49 198.0 194 59.3
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.1e-48 197.6 144 71.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.4e-48 196.4 193 60.6
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.2e-48 196.1 174 64.4
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 9.2e-48 194.5 228 54.4
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.2e-47 194.1 215 52.1
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-47 194.1 205 56.6
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 4.6e-47 192.2 254 50.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 4.6e-47 192.2 206 55.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 7.8e-47 191.4 192 56.8
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.0e-46 191.0 204 56.4
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.0e-46 191.0 242 50.0
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.7e-46 190.3 288 44.8
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.7e-46 190.3 215 53.0
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-46 189.5 209 54.1
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 3.0e-46 189.5 134 75.4
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.9e-46 189.1 228 52.2
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 5.1e-46 188.7 221 49.8
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 6.6e-46 188.3 205 55.1
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.6e-46 188.3 209 53.6
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.6e-46 188.3 209 53.6
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 8.7e-46 188.0 191 60.2
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.7e-46 188.0 243 50.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.5e-45 187.2 233 52.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 4.3e-45 185.7 201 53.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 9.6e-45 184.5 212 55.2
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.2e-44 184.1 207 53.1
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.2e-44 184.1 235 52.3
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 4.7e-44 182.2 194 56.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 6.2e-44 181.8 236 52.1
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.4e-43 180.6 231 51.9
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 7.6e-42 174.9 206 53.4
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.3e-41 174.1 229 51.5
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-41 173.7 198 53.5
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 3.8e-41 172.6 141 65.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.4e-40 170.6 192 53.6
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.2e-40 169.1 232 46.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.4e-40 168.7 185 52.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 9.3e-40 167.9 189 53.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 6.0e-39 165.2 144 63.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.3e-38 164.1 129 65.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.9e-38 162.5 195 52.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 8.7e-38 161.4 229 47.2
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 8.7e-38 161.4 111 67.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-36 157.1 193 48.7
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 6.2e-36 155.2 194 51.5
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 8.1e-36 154.8 104 72.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.6e-34 148.3 233 45.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.8e-33 146.0 110 68.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 3.9e-30 136.0 87 75.9
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 3.9e-30 136.0 87 75.9
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.9e-29 133.7 127 60.6
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.8e-28 129.8 164 49.4
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 4.9e-25 119.0 81 70.4
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.1e-24 117.9 127 54.3
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 2.1e-23 113.6 81 75.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.4e-21 105.1 64 79.7
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 6.9e-19 98.6 88 60.2
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.9e-17 93.2 85 51.8
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.7e-14 81.6 193 37.3
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.4e-11 73.6 117 37.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.5e-10 70.9 121 37.2
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.7e-09 67.4 40 77.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 2.7e-07 60.1 43 65.1
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 4.6e-07 59.3 93 41.9


User provided reference genes

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