Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0017821 Lotus japonicus HOM05D003693 ORTHO05D236454 2.2e-48 195.3 97 100.0
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 1.4e-10 69.7 40 82.5
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 5.3e-10 67.8 40 80.0
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 5.3e-10 67.8 40 80.0
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 6.9e-10 67.4 42 73.8
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 9.0e-10 67.0 42 73.8
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 9.0e-10 67.0 42 73.8
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 1.2e-09 66.6 40 77.5
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.2e-09 66.6 40 77.5
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.5e-09 66.2 42 71.4
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.5e-09 66.2 42 71.4
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 1.5e-09 66.2 40 77.5
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.5e-09 66.2 40 77.5
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 1.5e-09 66.2 42 71.4
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 2.0e-09 65.9 42 71.4
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 77.5
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 77.5
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 2.0e-09 65.9 42 71.4
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 2.0e-09 65.9 42 71.4
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 2.0e-09 65.9 42 71.4
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 77.5
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 75.0
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 75.0
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 2.0e-09 65.9 40 75.0
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.6e-09 65.5 42 71.4
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.6e-09 65.5 42 71.4
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.6e-09 65.5 40 75.0
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 2.6e-09 65.5 35 88.6
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 3.4e-09 65.1 42 69.0
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 3.4e-09 65.1 39 79.5
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 3.4e-09 65.1 40 75.0
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 4.5e-09 64.7 52 63.5
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.5e-09 64.7 36 83.3
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 4.5e-09 64.7 52 63.5
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 4.5e-09 64.7 40 75.0
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 4.5e-09 64.7 40 75.0
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 4.5e-09 64.7 42 69.0
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 4.5e-09 64.7 42 73.8
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 4.5e-09 64.7 40 75.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 4.5e-09 64.7 40 75.0
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 5.9e-09 64.3 40 75.0
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 5.9e-09 64.3 40 75.0
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 5.9e-09 64.3 40 75.0
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 75.0
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 75.0
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 7.6e-09 63.9 42 69.0
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 7.6e-09 63.9 40 72.5
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 7.6e-09 63.9 34 88.2
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.0e-08 63.5 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.3e-08 63.2 42 66.7
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.3e-08 63.2 40 72.5
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.3e-08 63.2 40 72.5
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 1.3e-08 63.2 40 75.0
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.7e-08 62.8 57 56.1
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.7e-08 62.8 40 70.0
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.7e-08 62.8 42 64.3
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 2.2e-08 62.4 40 70.0
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.2e-08 62.4 40 70.0
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 2.2e-08 62.4 40 70.0
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.2e-08 62.4 40 70.0
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 2.2e-08 62.4 42 66.7
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 70.0
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.9e-08 62.0 39 74.4
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 2.9e-08 62.0 42 66.7
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 2.9e-08 62.0 42 66.7
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 70.0
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 70.0
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 72.5
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 72.5
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 2.9e-08 62.0 40 72.5
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 3.8e-08 61.6 42 66.7
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 3.8e-08 61.6 42 66.7
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 3.8e-08 61.6 45 62.2
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 3.8e-08 61.6 42 66.7
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 5.0e-08 61.2 40 67.5
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 5.0e-08 61.2 40 67.5
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 5.0e-08 61.2 42 64.3
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 5.0e-08 61.2 40 70.0
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 5.0e-08 61.2 40 67.5
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 6.5e-08 60.8 40 67.5
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 6.5e-08 60.8 42 66.7
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 6.5e-08 60.8 40 70.0
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 6.5e-08 60.8 42 64.3
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 8.5e-08 60.5 36 77.8
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 8.5e-08 60.5 40 70.0
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 1.1e-07 60.1 38 71.1
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.1e-07 60.1 38 71.1
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 1.1e-07 60.1 40 67.5
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.4e-07 59.7 42 64.3
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 1.4e-07 59.7 42 64.3
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 1.4e-07 59.7 38 71.1
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 1.9e-07 59.3 51 56.9
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 2.5e-07 58.9 39 69.2
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 2.5e-07 58.9 35 74.3
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.5e-07 58.9 40 67.5
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 2.5e-07 58.9 39 69.2
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.2e-07 58.2 40 65.0
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 4.2e-07 58.2 39 71.8
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 5.5e-07 57.8 39 66.7
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 5.5e-07 57.8 39 66.7
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 5.5e-07 57.8 40 65.0
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 5.5e-07 57.8 40 65.0
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 7.2e-07 57.4 37 70.3


User provided reference genes

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