Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 5.5e-54 214.2 116 100.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 7.0e-25 117.5 130 57.7
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.2e-24 116.7 134 57.5
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 7.7e-24 114.0 120 61.7
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 3.6e-21 105.1 130 58.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 4.7e-21 104.8 131 58.0
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.4e-20 103.2 128 57.8
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 9.7e-19 97.1 128 57.0
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 2.8e-18 95.5 98 63.3
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 5.3e-17 91.3 127 48.8
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 7.0e-17 90.9 129 52.7
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.8e-15 85.1 130 49.2
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 8.5e-15 84.0 125 50.4
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-14 83.2 119 49.6
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.9e-14 82.8 117 50.4
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 1.9e-14 82.8 118 45.8
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.5e-14 82.4 127 45.7
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.2e-14 82.0 119 48.7
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.2e-14 82.0 119 48.7
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.2e-13 80.1 112 50.9
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 2.1e-13 79.3 119 47.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-13 79.3 119 47.9
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.0e-12 77.0 122 47.5
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.0e-12 77.0 115 47.0
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.4e-12 76.6 120 51.7
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 2.3e-12 75.9 116 52.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 4.0e-12 75.1 116 48.3
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 4.0e-12 75.1 115 46.1
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 4.0e-12 75.1 121 44.6
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 6.8e-12 74.3 115 50.4
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.2e-11 73.6 125 48.8
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 2.6e-11 72.4 112 49.1
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.6e-11 72.4 121 47.1
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.6e-11 72.4 109 47.7
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 2.6e-11 72.4 119 50.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.4e-11 72.0 120 47.5
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 4.4e-11 71.6 117 49.6
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.3e-10 70.1 125 47.2
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.2e-10 69.3 68 60.3
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 2.2e-10 69.3 122 45.1
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 2.2e-10 69.3 112 44.6
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.8e-10 68.9 48 79.2
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 2.8e-10 68.9 113 46.0
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.8e-10 68.9 113 48.7
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 3.7e-10 68.6 123 46.3
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 6.3e-10 67.8 55 70.9
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 6.3e-10 67.8 112 46.4
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 8.3e-10 67.4 115 43.5
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.3e-10 67.4 114 44.7
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.3e-10 67.4 114 44.7
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-09 66.6 108 45.4
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-09 66.6 108 45.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 2.4e-09 65.9 50 68.0
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 3.1e-09 65.5 112 42.0
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.4e-09 64.7 115 46.1
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 7.0e-09 64.3 47 72.3
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 7.0e-09 64.3 110 45.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 7.0e-09 64.3 56 66.1
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 9.1e-09 63.9 104 46.2
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 9.1e-09 63.9 62 54.8
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.2e-08 63.5 43 81.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 2.0e-08 62.8 72 56.9
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.0e-08 62.8 119 43.7
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.7e-08 62.4 119 48.7
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 3.5e-08 62.0 122 42.6
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 4.5e-08 61.6 103 41.7
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.9e-08 61.2 71 50.7
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 7.7e-08 60.8 46 65.2
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 7.7e-08 60.8 48 62.5
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.0e-07 60.5 118 42.4
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.0e-07 60.5 121 47.1
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.0e-07 60.5 49 65.3
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.3e-07 60.1 37 75.7
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.3e-07 60.1 58 56.9
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.3e-07 60.1 47 66.0
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.3e-07 59.3 118 41.5
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.3e-07 59.3 118 42.4
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.9e-07 58.9 115 39.1
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.8e-07 58.5 35 77.1
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.8e-07 58.5 111 36.9
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.0e-07 58.2 113 42.5
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 5.0e-07 58.2 50 60.0
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.6e-07 57.8 128 42.2
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.6e-07 57.8 73 52.1
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-06 56.6 59 50.8
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 1.5e-06 56.6 71 50.7
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.9e-06 56.2 114 41.2
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 2.5e-06 55.8 47 59.6
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.5e-06 55.8 36 66.7
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.3e-06 55.5 36 66.7
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 3.3e-06 55.5 47 55.3
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 4.2e-06 55.1 46 58.7
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 7.2e-06 54.3 71 46.5
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 9.5e-06 53.9 45 64.4


User provided reference genes

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