Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 9.0e-90 333.6 168 100.0
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 1.6e-70 269.6 164 79.3
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.7e-67 258.5 164 76.2
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 8.2e-67 257.3 164 73.2
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 7.6e-65 250.8 164 74.4
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 8.4e-64 247.3 163 73.0
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 1.1e-63 246.9 155 76.8
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.1e-62 242.7 158 74.7
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 6.1e-62 241.1 158 74.1
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 6.1e-62 241.1 164 73.2
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 1.3e-61 240.0 165 70.9
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.3e-61 239.2 164 69.5
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 3.0e-61 238.8 162 71.0
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 3.9e-61 238.4 162 70.4
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.9e-60 236.1 163 71.2
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 2.5e-60 235.7 162 69.8
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 4.3e-60 235.0 158 72.8
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 7.4e-60 234.2 161 70.2
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 1.6e-59 233.0 163 69.3
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 1.6e-59 233.0 149 75.2
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 2.8e-59 232.3 162 71.0
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 8.2e-59 230.7 163 69.3
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.8e-58 229.6 162 67.3
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 1.8e-58 229.6 162 69.1
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 2.4e-58 229.2 162 69.8
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 4.1e-58 228.4 163 68.1
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 9.0e-58 227.3 162 65.4
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 1.2e-57 226.9 162 66.0
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 3.4e-57 225.3 162 67.9
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 3.4e-57 225.3 163 68.7
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 4.5e-57 224.9 156 71.8
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 7.7e-57 224.2 163 66.9
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 1.0e-56 223.8 163 67.5
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.7e-56 223.0 163 66.9
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 1.7e-56 223.0 162 69.1
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 2.2e-56 222.6 162 68.5
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 2.2e-56 222.6 156 69.9
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 2.2e-56 222.6 161 67.7
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 2.9e-56 222.2 156 69.2
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 5.0e-56 221.5 156 69.2
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 5.0e-56 221.5 156 69.2
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 5.0e-56 221.5 156 69.2
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 5.0e-56 221.5 156 69.2
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 5.0e-56 221.5 160 67.5
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 1.1e-55 220.3 163 68.7
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 1.9e-55 219.5 156 68.6
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 1.9e-55 219.5 163 65.0
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 2.5e-55 219.2 159 67.3
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 4.2e-55 218.4 156 67.3
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 4.2e-55 218.4 164 67.1
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 5.5e-55 218.0 163 65.6
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 7.2e-55 217.6 165 67.3
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 7.2e-55 217.6 162 66.0
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 9.4e-55 217.2 162 66.0
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 1.6e-54 216.5 132 80.3
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 2.7e-54 215.7 156 66.7
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 2.7e-54 215.7 162 62.3
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 2.7e-54 215.7 162 64.2
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 1.0e-53 213.8 155 65.8
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 1.4e-53 213.4 166 62.0
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 3.9e-53 211.8 160 64.4
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 8.8e-53 210.7 162 66.0
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 8.8e-53 210.7 161 64.0
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 8.8e-53 210.7 158 66.5
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 1.1e-52 210.3 162 61.7
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 1.5e-52 209.9 162 59.9
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 4.3e-52 208.4 194 56.2
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 4.3e-52 208.4 164 62.8
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 7.4e-52 207.6 165 61.8
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 1.7e-51 206.5 164 60.4
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 3.7e-51 205.3 163 62.0
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 4.8e-51 204.9 163 64.4
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.1e-50 203.8 159 64.2
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 1.4e-50 203.4 163 62.0
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.4e-50 203.4 163 63.2
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.4e-50 203.4 163 62.6
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 1.4e-50 203.4 166 56.0
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.4e-50 203.4 164 62.2
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.8e-50 203.0 149 66.4
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 1.8e-50 203.0 162 59.9
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 1.8e-50 203.0 160 60.6
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.8e-50 203.0 162 63.0
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 3.1e-50 202.2 168 59.5
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 5.3e-50 201.4 162 61.1
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 5.3e-50 201.4 164 63.4
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 6.9e-50 201.1 167 59.9
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 9.1e-50 200.7 167 58.1
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 9.1e-50 200.7 158 63.3
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 2.6e-49 199.1 153 66.0
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 3.4e-49 198.7 152 64.5
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 7.7e-49 197.6 162 57.4
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.3e-48 196.8 158 63.3
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 1.7e-48 196.4 158 62.7
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.2e-48 196.1 153 63.4
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 2.9e-48 195.7 166 57.2
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 2.9e-48 195.7 164 59.1
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 5.0e-48 194.9 162 58.6
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 8.5e-48 194.1 169 56.2
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 2.5e-47 192.6 169 55.6
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 3.2e-47 192.2 162 56.8
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 4.2e-47 191.8 156 60.9
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 7.2e-47 191.0 160 55.6
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 7.2e-47 191.0 164 56.7
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 1.6e-46 189.9 153 59.5
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 1.6e-46 189.9 145 65.5
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 2.1e-46 189.5 156 60.3
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.6e-46 188.7 145 64.8
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 7.9e-46 187.6 149 62.4
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 1.0e-45 187.2 165 52.7
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 5.1e-45 184.9 153 60.1
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 5.1e-45 184.9 156 55.1
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 3.3e-44 182.2 162 55.6
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 5.7e-44 181.4 163 54.0
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 7.4e-44 181.0 152 58.6
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 1.8e-42 176.4 142 58.5
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 1.7e-40 169.9 167 47.9
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 7.2e-39 164.5 191 44.5
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 3.0e-37 159.1 125 62.4
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 2.0e-36 156.4 165 53.3
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 1.7e-35 153.3 116 65.5
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 8.2e-35 151.0 171 49.7
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 2.4e-34 149.4 127 59.1
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 2.7e-33 146.0 167 50.9
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 4.2e-31 138.7 155 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 7.2e-31 137.9 152 46.1
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 1.2e-28 130.6 140 43.6
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-25 120.6 168 38.1
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-25 120.6 168 38.1
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-25 120.6 168 38.1
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 1.6e-25 120.2 90 66.7
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 4.5e-25 118.6 75 69.3
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 7.7e-25 117.9 161 39.1
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 1.0e-24 117.5 80 72.5
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 1.0e-24 117.5 89 62.9
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 2.5e-23 112.8 149 38.9
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 1.0e-21 107.5 140 38.6
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 6.8e-21 104.8 91 57.1
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 2.0e-20 103.2 82 62.2
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 6.6e-16 88.2 170 32.9
SEGI_19507 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.1e-15 87.4 174 31.6
SEGI_41139 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.5e-15 87.0 174 31.6
SEGI_33126 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-14 84.0 174 31.0
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 2.3e-13 79.7 143 34.3
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 9.8e-12 74.3 150 30.0
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 7.0e-10 68.2 147 32.0
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-09 65.9 103 37.9
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 3.5e-09 65.9 51 58.8
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 2.3e-08 63.2 164 26.2
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 6.6e-08 61.6 127 31.5
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 8.6e-08 61.2 133 30.1
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.1e-07 60.8 117 29.9
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.5e-07 60.5 129 31.0
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 1.9e-07 60.1 145 30.3
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 3.3e-07 59.3 119 31.9
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 3.3e-07 59.3 119 31.9
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 3.3e-07 59.3 119 29.4
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.3e-07 58.9 119 29.4
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 7.3e-07 58.2 117 28.2
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 9.5e-07 57.8 127 31.5
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 9.5e-07 57.8 127 30.7
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 9.5e-07 57.8 117 29.9
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 9.5e-07 57.8 117 30.8
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 9.5e-07 57.8 118 27.1
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 1.2e-06 57.4 156 28.2
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 1.6e-06 57.0 118 31.4
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 1.6e-06 57.0 155 25.2
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.6e-06 57.0 129 30.2
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 2.1e-06 56.6 157 24.2
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 2.1e-06 56.6 140 29.3
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 2.8e-06 56.2 117 30.8
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.8e-06 56.2 155 26.5
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 3.6e-06 55.8 132 26.5
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 6.2e-06 55.1 116 28.4
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 8.0e-06 54.7 135 25.2


User provided reference genes

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