Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 3.6e-59 231.5 126 100.0
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 6.4e-48 194.1 128 78.9
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 6.4e-48 194.1 128 82.0
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.1e-47 193.4 127 82.7
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 2.7e-46 188.7 127 79.5
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 2.5e-44 182.2 128 76.6
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 9.5e-44 180.3 128 75.8
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 2.1e-43 179.1 128 74.2
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 4.7e-43 177.9 128 75.0
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 3.1e-42 175.3 130 71.5
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 8.9e-42 173.7 128 74.2
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.2e-41 173.3 129 73.6
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.5e-41 172.9 130 70.8
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 2.9e-40 168.7 132 78.0
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 1.8e-26 122.9 91 74.7
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 4.4e-25 118.2 87 67.8
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 4.4e-25 118.2 77 76.6
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.8e-25 117.9 71 80.3
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 5.8e-25 117.9 87 71.3
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 7.6e-25 117.5 87 70.1
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 4.9e-24 114.8 103 57.3
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 4.9e-24 114.8 90 68.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 6.4e-24 114.4 89 65.2
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 6.4e-24 114.4 90 68.9
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.4e-24 114.4 90 68.9
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.4e-24 114.4 90 68.9
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 8.4e-24 114.0 73 74.0
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 123 56.1
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 123 56.1
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 8.4e-24 114.0 72 75.0
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.4e-24 114.0 72 75.0
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 72 75.0
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 72 75.0
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.1e-23 113.6 72 73.6
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.4e-23 113.2 114 57.0
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-23 112.8 90 67.8
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 3.2e-23 112.1 113 54.0
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 7.1e-23 110.9 88 67.0
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 88 65.9
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 88 65.9
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 88 65.9
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 72 72.2
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 1.6e-22 109.8 93 64.5
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.6e-22 109.8 70 74.3
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 1.6e-22 109.8 72 69.4
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 2.1e-22 109.4 72 69.4
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 3.5e-22 108.6 74 71.6
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 4.6e-22 108.2 72 68.1
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 4.6e-22 108.2 72 70.8
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 4.6e-22 108.2 72 70.8
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 4.6e-22 108.2 72 70.8
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 6.0e-22 107.8 88 63.6
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 7.8e-22 107.5 73 69.9
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 1.0e-21 107.1 80 72.5
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 1.3e-21 106.7 66 77.3
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.3e-21 106.7 72 69.4
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.7e-21 106.3 72 69.4
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.3e-21 105.9 70 71.4
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 3.0e-21 105.5 80 71.2
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 3.0e-21 105.5 80 71.2
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.1e-21 104.8 87 62.1
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 8.7e-21 104.0 71 69.0
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.9e-20 102.8 71 67.6
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.9e-20 102.8 80 70.0
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 2.5e-20 102.4 70 75.7
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.5e-20 102.4 72 65.3
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 3.3e-20 102.1 80 68.8
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 3.3e-20 102.1 80 70.0
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 7.3e-20 100.9 80 68.8
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 7.3e-20 100.9 80 68.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 9.6e-20 100.5 82 65.9
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 2.1e-19 99.4 58 82.8
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 3.6e-19 98.6 82 65.9
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 8.1e-19 97.4 80 67.5
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.3e-18 94.7 66 68.2
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 6.9e-18 94.4 81 65.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.8e-16 88.6 57 71.9
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.4e-15 85.9 71 62.0
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 3.2e-15 85.5 58 67.2
Psat2g025600 Pisum sativum HOM05D000540 ORTHO05D008105 9.3e-15 84.0 65 64.6
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 7.9e-14 80.9 89 47.2
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.1e-13 78.2 76 56.6
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-12 74.7 56 58.9
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 7.4e-12 74.3 57 57.9
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 9.6e-12 73.9 56 58.9
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 1.6e-11 73.2 56 58.9
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 2.1e-11 72.8 56 57.1
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.8 56 57.1
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 2.8e-11 72.4 56 58.9
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 3.6e-11 72.0 55 58.2
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 3.6e-11 72.0 56 55.4
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 4.8e-11 71.6 70 51.4
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 4.8e-11 71.6 58 58.6
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 4.8e-11 71.6 56 58.9
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 6.2e-11 71.2 72 54.2
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 8.1e-11 70.9 56 58.9
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 8.1e-11 70.9 56 58.9
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 1.1e-10 70.5 55 56.4
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 1.8e-10 69.7 54 55.6
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 1.8e-10 69.7 56 55.4
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 3.1e-10 68.9 70 52.9
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 3.1e-10 68.9 70 52.9
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 3.1e-10 68.9 54 63.0
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 45 66.7
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 5.3e-10 68.2 55 52.7
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 5.3e-10 68.2 46 63.0
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.2e-09 67.0 92 45.7
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 2.0e-09 66.2 78 48.7
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 2.6e-09 65.9 47 70.2
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 2.6e-09 65.9 56 53.6
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 2.6e-09 65.9 53 56.6
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 5.8e-09 64.7 49 59.2
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 9.9e-09 63.9 56 53.6
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 9.9e-09 63.9 56 53.6
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.3e-08 63.5 57 59.6
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 6.4e-08 61.2 44 59.1
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 8.4e-08 60.8 73 46.6
Psat4g009760 Pisum sativum HOM05D000540 ORTHO05D008105 8.4e-08 60.8 53 60.4
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 1.9e-07 59.7 45 57.8
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 7.1e-07 57.8 34 76.5
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 7.1e-07 57.8 45 53.3
SHI37890 Sapria himalayana HOM05D000540 ORTHO05D008105 9.3e-07 57.4 53 54.7
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 1.2e-06 57.0 69 50.7
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 1.2e-06 57.0 44 56.8
SHI40537 Sapria himalayana HOM05D000540 ORTHO05D008105 2.1e-06 56.2 45 57.8
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 3.5e-06 55.5 57 49.1
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 3.5e-06 55.5 71 45.1
SHI37207 Sapria himalayana HOM05D000540 ORTHO05D008105 3.5e-06 55.5 65 44.6
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 6.0e-06 54.7 80 47.5
SHI47944 Sapria himalayana HOM05D000540 ORTHO05D008105 7.9e-06 54.3 45 55.6


User provided reference genes

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