Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 8.3e-146 520.4 271 100.0
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 5.4e-129 464.5 271 87.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.0e-128 461.1 271 88.2
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.0e-119 433.7 270 83.0
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 3.9e-119 431.8 270 84.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 3.3e-118 428.7 273 82.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 6.9e-116 421.0 268 82.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 5.8e-115 417.9 246 87.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.3e-111 406.8 304 73.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.5e-110 403.3 271 76.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.5e-107 393.3 274 74.5
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 3.4e-107 392.1 275 73.5
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 6.5e-106 387.9 268 73.5
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 8.4e-106 387.5 271 74.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 2.5e-105 386.0 271 74.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.5e-105 386.0 271 75.3
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.5e-105 386.0 271 74.5
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.2e-105 385.2 269 74.3
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 4.6e-104 381.7 270 75.6
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.6e-104 381.7 271 71.6
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 6.0e-104 381.3 271 73.8
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 7.9e-104 380.9 269 76.6
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.9e-104 380.9 266 72.2
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.8e-103 379.8 271 73.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.3e-103 379.4 261 73.6
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 5.1e-103 378.3 271 72.7
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 5.1e-103 378.3 271 72.3
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.1e-103 378.3 264 73.9
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 6.7e-103 377.9 271 72.7
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 3.3e-102 375.6 271 70.1
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.3e-102 375.6 273 71.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 9.7e-102 374.0 273 71.1
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.3e-101 373.6 271 72.7
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.2e-101 372.9 271 72.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 3.7e-101 372.1 271 72.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 4.8e-101 371.7 276 70.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.8e-101 371.7 279 71.7
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 6.3e-101 371.3 273 70.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 8.2e-101 370.9 273 71.1
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.4e-100 370.2 273 71.4
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.4e-100 370.2 271 70.5
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 9.0e-100 367.5 273 68.9
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.0e-100 367.5 287 66.9
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.5e-99 366.7 273 68.9
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.4e-99 365.5 271 69.0
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.0e-98 364.0 269 71.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.7e-98 363.2 273 70.0
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.2e-98 362.8 275 68.7
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.2e-98 362.8 273 69.2
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 2.2e-98 362.8 273 68.9
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.9e-98 362.5 271 69.7
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.8e-98 362.1 273 68.1
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-98 362.1 277 69.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-98 360.9 277 69.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-97 359.0 277 69.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 4.2e-97 358.6 254 76.0
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.7e-96 355.9 277 68.2
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.5e-94 350.1 264 68.2
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.9e-94 349.7 275 68.4
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 7.4e-94 347.8 275 68.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.7e-93 346.7 272 67.3
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.8e-93 345.9 271 66.1
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.1e-92 342.4 273 65.2
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.1e-92 342.0 271 67.5
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 4.1e-92 342.0 271 66.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 5.3e-92 341.7 272 67.6
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.3e-92 341.7 287 65.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 6.9e-92 341.3 271 64.9
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 9.1e-92 340.9 271 65.3
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.5e-91 340.1 266 65.8
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.6e-91 339.3 271 66.1
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 3.4e-91 339.0 271 65.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 7.7e-91 337.8 338 55.6
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-90 337.0 259 69.1
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.2e-90 336.3 246 70.7
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 2.2e-90 336.3 271 64.2
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.9e-90 335.9 272 67.6
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.9e-90 335.9 269 65.8
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.9e-90 335.9 271 64.2
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.4e-89 333.6 269 65.8
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 3.2e-89 332.4 262 67.2
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.4e-87 327.0 264 65.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.3e-86 322.4 220 72.7
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.7e-85 320.1 269 63.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.8e-85 319.3 261 64.8
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 6.3e-85 318.2 270 64.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.9e-81 306.6 272 62.1
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 8.0e-80 301.2 267 59.9
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.0e-79 300.8 267 60.7
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.3e-79 299.7 182 83.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.0e-75 286.6 246 61.8
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 4.5e-75 285.4 261 56.3
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.5e-74 281.2 270 58.9
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.1e-72 275.0 190 72.6
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.3e-71 273.1 289 54.0
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.0e-66 257.7 271 52.8
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.1e-64 250.0 194 62.9
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 3.4e-62 242.7 274 52.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.1e-60 237.7 247 57.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 5.7e-54 215.3 199 61.8
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 9.8e-54 214.5 262 46.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.7e-53 213.8 262 45.8
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.5e-51 205.7 140 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.9e-51 205.3 268 42.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 3.3e-49 199.5 227 47.1
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 8.9e-47 191.4 343 40.2
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-37 160.6 115 74.8
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.7e-37 159.5 132 59.8
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-37 159.5 115 73.9
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.1e-36 157.9 108 76.9
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 6.6e-34 148.7 94 80.9
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.1e-32 143.7 140 57.9
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-30 136.3 112 65.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 4.4e-30 136.0 128 58.6
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 4.4e-30 136.0 84 81.0
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 4.9e-29 132.5 148 53.4
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 8.3e-29 131.7 135 55.6
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.7e-27 126.7 270 34.8
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 3.9e-26 122.9 112 61.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.5e-25 120.2 245 33.9
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 7.3e-25 118.6 108 61.1
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.1e-24 117.1 104 60.6
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 4.7e-24 115.9 74 86.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-23 114.0 110 58.2
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.2e-21 107.1 66 74.2
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 8.4e-21 105.1 74 74.3
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-19 100.9 56 80.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.0e-18 96.7 117 52.1
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 8.7e-18 95.1 56 82.1
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.3e-17 93.2 74 67.6
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.1e-16 90.5 104 54.8
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.1e-16 90.5 69 60.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 3.8e-13 79.7 82 58.5
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 3.3e-09 66.6 98 42.9
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.6e-08 64.3 68 54.4
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 1.8e-07 60.8 37 78.4
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 3.1e-07 60.1 74 51.4
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.5e-06 56.2 51 58.8


User provided reference genes

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