Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 0.0e+00 1196.4 617 100.0
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.3e-189 667.2 692 56.5
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.5e-187 660.2 690 55.8
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 4.0e-180 635.6 690 54.1
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 9.7e-174 614.4 692 53.8
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 4.1e-172 609.0 684 53.7
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.5e-166 590.5 675 51.6
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.5e-166 590.5 675 51.6
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.3e-165 587.4 681 52.1
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.7e-165 587.0 683 51.8
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.3e-162 577.4 642 53.7
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.9e-161 573.5 653 53.3
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.1e-160 570.1 657 53.7
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 3.2e-153 546.2 638 51.7
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 1.8e-132 477.2 708 42.4
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.1e-124 451.4 654 42.5
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.2e-118 431.4 712 40.2
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.1e-112 410.6 631 41.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 4.7e-112 409.5 651 40.7
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.1e-111 406.8 630 40.8
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 3.4e-110 403.3 644 39.8
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 5.8e-110 402.5 686 38.8
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 4.9e-109 399.4 642 39.6
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 6.0e-107 392.5 655 38.2
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.1e-105 388.3 626 39.9
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 2.5e-105 387.1 676 38.0
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 3.1e-103 380.2 686 37.6
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.7e-101 374.4 636 39.2
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 2.2e-101 374.0 612 39.5
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 4.9e-101 372.9 641 37.4
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 8.4e-101 372.1 667 37.5
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.1e-100 371.7 669 37.5
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.1e-100 369.8 647 37.6
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 1.2e-99 368.2 696 36.2
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.3e-98 364.0 516 44.6
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 5.1e-98 362.8 671 36.8
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 3.3e-97 360.1 651 38.6
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.4e-95 354.8 626 37.7
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-95 354.4 656 38.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.8e-95 352.4 652 38.0
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 2.0e-94 350.9 629 37.8
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 3.4e-94 350.1 625 37.1
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.7e-91 340.5 664 34.9
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 3.5e-91 340.1 634 37.7
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.9e-89 334.3 686 35.7
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 7.3e-89 332.4 702 35.0
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.8e-87 327.8 690 35.1
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 2.4e-87 327.4 671 35.0
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.5e-86 324.7 690 34.3
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 2.6e-86 323.9 697 34.3
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.3e-85 321.6 674 34.0
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.6e-83 314.7 644 35.2
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 3.5e-83 313.5 657 35.6
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.0e-82 312.0 720 33.3
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 3.0e-82 310.5 644 34.8
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 3.3e-81 307.0 598 36.5
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 5.6e-81 306.2 695 33.2
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.3e-80 305.1 656 34.5
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 2.4e-79 300.8 660 34.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.5e-78 298.1 649 35.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 7.6e-78 295.8 685 33.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.3e-77 295.0 409 43.3
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 6.4e-77 292.7 659 34.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 8.4e-77 292.4 727 32.6
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.5e-75 287.0 444 41.9
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 2.1e-72 277.7 679 33.4
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 6.2e-72 276.2 655 32.1
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 7.6e-70 269.2 644 32.1
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 2.2e-69 267.7 605 33.4
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 6.5e-69 266.2 573 33.9
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.9e-68 264.6 677 31.0
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.2e-67 261.9 692 31.1
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.2e-67 261.9 646 32.2
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.6e-67 261.5 532 35.7
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 2.1e-67 261.2 581 33.4
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 3.5e-67 260.4 653 32.5
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 6.0e-67 259.6 583 34.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.7e-65 253.1 545 34.7
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.1e-63 248.8 709 31.0
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 2.4e-63 247.7 709 30.6
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.9e-63 246.1 724 29.6
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.5e-62 245.0 529 36.5
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.3e-61 241.9 529 36.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.3e-61 241.9 713 30.0
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.2e-61 241.1 648 31.3
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 6.5e-61 239.6 681 28.6
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 7.2e-60 236.1 508 34.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 4.6e-59 233.4 634 30.8
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.0e-58 232.3 632 30.9
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 2.3e-58 231.1 707 30.8
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 3.9e-58 230.3 635 30.2
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 6.7e-58 229.6 425 35.8
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 5.9e-54 216.5 623 27.9
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.5e-52 211.1 636 29.1
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.2e-51 208.8 514 33.3
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 6.1e-51 206.5 550 32.2
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.2e-46 192.2 269 44.2
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 2.7e-43 181.0 580 29.0
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-39 168.7 343 36.7
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 5.0e-37 160.2 332 33.1
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.8e-34 151.8 273 36.6
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.6e-33 147.9 506 31.0
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.7e-32 145.2 637 25.1
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.3e-31 140.2 308 33.4
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 8.0e-27 126.3 447 27.3
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 4.4e-25 120.6 338 29.3
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.3e-24 119.0 374 28.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 3.8e-21 107.5 482 27.4
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 3.8e-21 107.5 372 25.5
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.9e-13 81.3 179 33.0
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.2e-11 75.9 334 25.4
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.6e-09 68.2 91 39.6
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 7.5e-09 66.6 100 42.0
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.7e-08 65.5 88 37.5
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 5.4e-07 60.5 63 47.6


User provided reference genes

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