Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.3e-221 771.2 429 100.0
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 5.9e-146 521.5 429 63.6
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 8.9e-142 507.7 425 62.8
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 8.9e-142 507.7 428 62.4
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 9.8e-141 504.2 427 62.5
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 3.7e-140 502.3 432 61.6
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 6.6e-137 491.5 427 61.6
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 1.1e-136 490.7 425 61.6
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 6.1e-135 485.0 425 61.2
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 3.1e-134 482.6 335 71.9
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 7.5e-125 451.4 441 59.2
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 5.4e-115 418.7 337 62.9
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 8.4e-108 394.8 341 58.9
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.0e-105 387.9 338 56.8
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 9.0e-102 374.8 337 55.8
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 2.6e-101 373.2 343 56.3
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 7.6e-101 371.7 439 48.7
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.4e-99 367.5 332 55.1
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.3e-97 360.9 337 53.7
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 3.0e-97 359.8 336 54.5
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 3.0e-97 359.8 337 53.4
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.9e-96 357.1 337 53.4
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 1.9e-96 357.1 283 60.8
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.3e-96 355.9 337 52.8
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 9.6e-96 354.8 332 55.4
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 9.6e-96 354.8 334 53.9
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.1e-95 353.6 334 53.6
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 2.8e-95 353.2 338 53.8
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 8.1e-95 351.7 343 53.9
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.8e-94 350.5 336 53.3
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 6.9e-94 348.6 334 52.4
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 6.9e-94 348.6 336 51.8
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 9.0e-94 348.2 342 54.4
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.2e-93 347.8 342 51.5
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 1.5e-93 347.4 332 54.5
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.7e-92 344.0 342 51.8
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 8.4e-92 341.7 316 58.9
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.6e-90 337.4 329 53.5
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 4.6e-90 335.9 337 52.5
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 1.3e-89 334.3 334 51.8
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.8e-89 334.0 299 57.5
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 2.3e-89 333.6 332 53.9
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 3.9e-89 332.8 335 52.5
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 5.1e-89 332.4 277 57.0
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 6.7e-89 332.0 321 54.8
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 8.7e-89 331.6 328 53.4
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 2.5e-88 330.1 343 51.6
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.3e-88 329.3 343 51.6
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 7.4e-88 328.6 281 55.5
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 1.6e-87 327.4 333 51.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 4.8e-87 325.9 347 49.6
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 8.1e-87 325.1 332 51.5
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 8.1e-87 325.1 337 51.0
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 2.4e-86 323.6 281 55.2
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 3.1e-86 323.2 336 52.1
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.0e-86 322.8 338 52.1
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 2.0e-85 320.5 339 49.6
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 3.4e-85 319.7 281 54.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 2.9e-84 316.6 355 49.3
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.9e-84 316.6 399 43.4
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 3.8e-84 316.2 296 53.0
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 3.8e-84 316.2 344 52.6
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 4.9e-84 315.8 291 53.3
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 1.9e-83 313.9 339 49.3
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.0e-81 308.1 252 59.9
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 9.6e-80 301.6 337 48.4
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.4e-78 297.7 336 49.1
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 3.4e-77 293.1 332 48.5
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 1.7e-76 290.8 277 52.3
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 2.9e-76 290.0 284 50.4
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 5.0e-76 289.3 421 41.6
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 6.5e-76 288.9 334 46.7
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.4e-75 287.7 338 46.2
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 3.2e-75 286.6 352 45.5
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 4.2e-75 286.2 275 50.5
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 1.3e-73 281.2 206 62.6
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.1e-72 278.1 346 44.5
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.1e-72 278.1 294 47.3
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.5e-72 277.7 347 46.4
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.2e-71 273.9 293 47.1
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.4e-70 270.4 314 46.5
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 2.4e-70 270.4 333 45.9
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.2e-69 268.1 337 46.0
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.0e-69 267.3 334 46.7
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 5.5e-67 259.2 342 45.9
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 2.2e-63 247.3 412 40.0
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 2.6e-61 240.4 237 54.4
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 9.4e-59 231.9 236 53.4
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.2e-58 231.5 334 42.2
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 4.7e-58 229.6 237 51.1
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 3.0e-57 226.9 331 40.5
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 5.7e-56 222.6 225 52.0
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 2.8e-55 220.3 539 31.0
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.6e-48 197.2 167 57.5
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 4.4e-48 196.4 199 50.3
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 3.7e-47 193.4 303 38.0
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 1.0e-41 175.3 182 47.3
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 5.2e-41 172.9 204 47.1
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 8.3e-39 165.6 162 50.6
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-35 154.8 334 32.3
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 3.2e-35 153.7 128 60.9
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 8.3e-31 139.0 136 55.1
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 9.1e-30 135.6 110 61.8
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 2.7e-29 134.0 105 56.2
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 3.7e-23 113.6 168 35.7
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 6.3e-23 112.8 108 56.5
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 5.4e-22 109.8 210 37.1
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 2.8e-18 97.4 81 58.0
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 6.2e-18 96.3 115 44.3
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.4e-17 95.1 69 65.2
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.0e-12 79.0 237 27.0
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.7e-12 78.2 344 25.0
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 4.3e-11 73.6 130 41.5
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 6.8e-09 66.2 231 26.0
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 8.9e-09 65.9 44 61.4
Psat1g198480 Pisum sativum HOM05D000724 ORTHO05D012138 2.6e-08 64.3 84 45.2
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 9.8e-08 62.4 37 70.3
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 4.1e-06 57.0 79 43.0


User provided reference genes

Program Settings