Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 1.2e-63 246.5 138 100.0
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 5.5e-29 131.3 138 63.0
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 1.2e-28 130.2 140 60.7
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.1e-24 117.1 138 52.9
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 9.2e-24 114.0 142 53.5
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 2.7e-23 112.5 132 50.8
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 2.7e-23 112.5 140 50.0
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 5.9e-23 111.3 120 54.2
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 5.9e-23 111.3 143 55.2
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 7.8e-23 110.9 104 57.7
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 1.3e-22 110.2 147 47.6
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 1.7e-22 109.8 144 52.8
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.3e-22 109.4 135 51.9
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.9e-22 109.0 100 59.0
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 3.9e-22 108.6 136 46.3
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 6.6e-22 107.8 103 60.2
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 8.6e-22 107.5 144 47.2
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 1.1e-21 107.1 102 56.9
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 2.5e-21 105.9 119 54.6
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.5e-21 105.9 104 55.8
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 4.3e-21 105.1 101 56.4
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 4.3e-21 105.1 101 56.4
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 1.2e-20 103.6 129 51.9
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 2.8e-20 102.4 144 49.3
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 4.7e-20 101.7 148 50.0
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 6.1e-20 101.3 130 49.2
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 6.1e-20 101.3 116 49.1
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.0e-19 100.5 90 60.0
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 1.8e-19 99.8 143 47.6
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 3.1e-19 99.0 133 46.6
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 4.0e-19 98.6 131 47.3
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 4.0e-19 98.6 110 50.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 6.8e-19 97.8 151 43.7
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 8.9e-19 97.4 150 45.3
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 8.9e-19 97.4 135 48.1
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 1.5e-18 96.7 139 48.9
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 3.4e-18 95.5 141 46.8
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 4.4e-18 95.1 144 53.5
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 5.8e-18 94.7 134 44.8
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 9.8e-18 94.0 135 44.4
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 1.3e-17 93.6 141 45.4
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.3e-17 93.6 129 45.7
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 2.2e-17 92.8 103 52.4
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 2.2e-17 92.8 124 48.4
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 2.9e-17 92.4 149 40.9
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 3.7e-17 92.0 138 44.9
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 6.4e-17 91.3 146 45.2
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 6.4e-17 91.3 139 45.3
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 8.3e-17 90.9 145 41.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 8.3e-17 90.9 102 52.0
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 8.3e-17 90.9 102 52.0
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.4e-16 90.1 102 51.0
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 1.9e-16 89.7 147 51.0
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.9e-16 89.7 138 43.5
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.9e-16 89.7 103 52.4
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 1.9e-16 89.7 144 43.8
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 2.4e-16 89.4 102 50.0
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 2.4e-16 89.4 141 48.2
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 3.2e-16 89.0 146 42.5
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 9.2e-16 87.4 145 48.3
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.2e-15 87.0 145 47.6
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 1.2e-15 87.0 145 47.6
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.2e-15 87.0 160 44.4
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 1.2e-15 87.0 119 46.2
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 3.5e-15 85.5 130 43.8
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.6e-15 85.1 199 33.7
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 6.0e-15 84.7 132 44.7
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 6.0e-15 84.7 102 49.0
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 7.8e-15 84.3 102 52.0
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 7.8e-15 84.3 96 53.1
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.0e-14 84.0 145 40.7
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.0e-14 84.0 103 48.5
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.0e-14 84.0 103 48.5
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 1.0e-14 84.0 100 47.0
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.0e-14 84.0 160 44.4
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.0e-14 84.0 99 48.5
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.7e-14 83.2 130 42.3
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.7e-14 83.2 130 42.3
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.7e-14 83.2 103 48.5
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.0e-14 82.4 103 48.5
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.0e-14 82.4 103 48.5
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 3.0e-14 82.4 98 59.2
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 3.0e-14 82.4 101 45.5
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 3.9e-14 82.0 103 46.6
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 5.0e-14 81.6 111 41.4
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 8.6e-14 80.9 101 48.5
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 8.6e-14 80.9 101 48.5
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-13 79.7 100 47.0
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 4.3e-13 78.6 100 47.0
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 5.6e-13 78.2 147 41.5
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 6.2e-12 74.7 144 45.8
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.2e-12 74.7 63 65.1
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 8.1e-12 74.3 135 40.7
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 1.8e-11 73.2 94 50.0
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 2.3e-11 72.8 121 41.3
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 2.6e-10 69.3 132 40.9
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 3.4e-10 68.9 76 48.7
Glyma.04G142000 Glycine max HOM05D007435 ORTHO05D009338 7.5e-10 67.8 137 39.4
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 3.7e-09 65.5 92 47.8
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 4.9e-09 65.1 113 45.1
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 6.4e-09 64.7 72 50.0
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 3.2e-08 62.4 111 40.5
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 9.2e-08 60.8 90 43.3
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 2.7e-07 59.3 114 47.4


User provided reference genes

Program Settings