Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.4e-86 321.6 160 100.0
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.4e-76 288.9 165 86.1
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.6e-75 286.2 160 87.5
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 2.9e-74 282.0 165 84.8
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 4.3e-73 278.1 160 83.8
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 4.3e-73 278.1 155 86.5
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 5.6e-73 277.7 160 83.8
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 2.1e-72 275.8 155 86.5
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 82.5
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.2e-70 270.0 160 81.9
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 79.4
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.5e-70 269.6 165 81.8
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 3.4e-70 268.5 180 75.6
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 80.6
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 9.8e-70 266.9 160 80.6
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 81.9
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 80.0
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.3e-69 266.5 161 82.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.7e-69 266.2 157 79.0
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.7e-69 266.2 154 81.2
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 3.7e-69 265.0 160 78.8
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 3.7e-69 265.0 160 80.6
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.9e-69 264.6 155 80.6
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.9e-69 264.6 155 80.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 8.3e-69 263.8 157 82.2
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 8.3e-69 263.8 157 79.6
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 8.3e-69 263.8 157 79.6
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.1e-68 263.5 156 79.5
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.1e-68 263.5 155 82.6
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.1e-68 263.5 155 82.6
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.4e-68 263.1 155 80.6
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 2.4e-68 262.3 152 80.9
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.2e-68 261.9 156 80.8
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.2e-68 261.9 155 81.9
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.2e-68 261.9 154 81.2
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 3.2e-68 261.9 160 78.8
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 5.4e-68 261.2 157 80.9
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 5.4e-68 261.2 154 79.9
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 7.0e-68 260.8 158 80.4
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 7.0e-68 260.8 160 77.5
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 7.0e-68 260.8 160 79.4
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 9.2e-68 260.4 154 81.2
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.2e-67 260.0 157 79.6
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.2e-67 260.0 156 78.8
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.6e-67 259.6 152 81.6
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.6e-67 259.6 157 79.0
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.6e-67 259.6 157 79.0
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 2.0e-67 259.2 160 79.4
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 2.0e-67 259.2 145 84.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 2.0e-67 259.2 159 78.0
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.7e-67 258.8 156 78.2
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.7e-67 258.8 154 80.5
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 2.7e-67 258.8 152 80.9
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.5e-67 258.5 154 80.5
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.0e-67 257.7 157 79.0
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 6.0e-67 257.7 152 78.9
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 7.8e-67 257.3 152 80.3
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 157 77.7
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.0e-66 256.9 158 76.6
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.3e-66 256.5 160 74.4
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.7e-66 256.1 152 80.3
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 2.3e-66 255.8 150 80.7
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.0e-66 255.4 158 79.7
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 3.9e-66 255.0 159 78.0
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 5.0e-66 254.6 153 79.7
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 6.6e-66 254.2 158 78.5
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-65 252.7 158 76.6
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.9e-65 252.7 156 80.1
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 5.6e-65 251.1 178 70.8
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 5.6e-65 251.1 152 78.9
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 163 76.1
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 7.3e-65 250.8 154 78.6
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.3e-65 250.8 141 84.4
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 9.5e-65 250.4 148 79.1
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 9.5e-65 250.4 141 85.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 9.5e-65 250.4 154 76.6
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 3.6e-64 248.4 155 76.1
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 4.7e-64 248.1 159 75.5
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 8.0e-64 247.3 160 78.1
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.4e-63 246.5 158 74.7
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.8e-63 246.1 141 83.7
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 3.1e-63 245.4 154 77.3
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 4.0e-63 245.0 163 74.8
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 5.2e-63 244.6 141 83.0
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 8.9e-63 243.8 141 82.3
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 8.9e-63 243.8 177 70.1
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 8.9e-63 243.8 154 79.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.0e-62 242.7 141 81.6
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.0e-62 242.7 144 78.5
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 2.6e-62 242.3 142 79.6
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 3.4e-62 241.9 141 80.9
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 9.8e-62 240.4 144 75.7
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 9.8e-62 240.4 155 73.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.2e-61 239.2 158 70.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.2e-61 239.2 146 78.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.9e-61 238.8 157 71.3
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.4e-60 234.6 160 74.4
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.6e-59 233.0 160 72.5
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.5e-59 231.9 139 77.0
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 2.3e-58 229.2 156 71.8
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 9.5e-57 223.8 159 69.2
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.1e-55 220.3 159 68.6
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.4e-55 219.9 142 72.5
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.3e-55 219.2 159 67.3
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 2.0e-54 216.1 159 67.3
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.0e-54 216.1 146 69.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 9.9e-54 213.8 159 66.0
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 3.7e-53 211.8 157 67.5
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 3.7e-53 211.8 157 67.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 6.4e-53 211.1 159 66.0
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 8.3e-53 210.7 141 70.9
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.4e-52 209.9 159 66.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.4e-52 209.9 159 66.0
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.9e-52 209.5 141 70.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.9e-52 209.5 162 63.6
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.4e-52 209.1 159 65.4
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.4e-52 209.1 159 65.4
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 3.5e-51 205.3 154 70.1
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 6.0e-51 204.5 186 56.5
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.3e-50 203.4 132 73.5
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 6.2e-48 194.5 127 73.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.0e-46 189.5 157 59.9
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.8e-45 185.3 113 76.1
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.6e-43 179.9 130 60.8
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 7.3e-41 171.0 93 89.2
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.9e-37 158.3 120 66.7
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 7.8e-35 151.0 132 57.6
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 5.1e-34 148.3 129 53.5
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-33 146.4 93 74.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.8e-32 142.5 98 71.4
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 9.9e-30 134.0 87 74.7
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 4.2e-28 128.6 140 47.1
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 4.2e-28 128.6 75 77.3
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.8e-23 113.2 114 51.8
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 3.4e-22 109.0 114 50.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.0e-13 80.9 48 77.1
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 3.8e-13 79.0 50 76.0


User provided reference genes

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