Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.5e-171 606.3 343 100.0
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 4.2e-142 508.4 344 82.6
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 2.8e-138 495.7 343 75.5
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 2.6e-136 489.2 344 74.7
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 5.8e-136 488.0 343 74.1
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 5.1e-132 474.9 339 78.5
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.5e-128 463.4 343 78.7
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 3.2e-118 429.1 344 74.4
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 5.6e-115 418.3 340 74.7
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 6.9e-113 411.4 344 60.2
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.3e-108 397.1 344 59.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.9e-107 393.3 344 66.9
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 7.4e-107 391.3 340 66.2
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 3.4e-104 382.5 343 64.7
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 5.9e-104 381.7 344 59.0
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 3.8e-103 379.0 343 58.0
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.4e-102 377.1 324 68.5
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 2.7e-101 372.9 321 60.1
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 3.6e-101 372.5 324 67.6
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 4.6e-101 372.1 343 65.6
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 7.9e-101 371.3 337 58.5
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 3.0e-100 369.4 324 65.7
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 3.9e-100 369.0 337 62.6
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 5.1e-100 368.6 324 65.4
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 1.1e-99 367.5 334 63.5
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 2.2e-98 363.2 338 66.3
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 3.7e-98 362.5 342 54.7
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 4.8e-98 362.1 317 58.4
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 8.2e-98 361.3 333 67.0
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.1e-97 360.9 335 63.9
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.8e-97 360.1 317 58.0
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.4e-97 359.8 333 64.0
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 4.1e-97 359.0 335 63.6
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 5.3e-97 358.6 332 56.6
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 6.9e-97 358.2 335 63.9
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 4.5e-96 355.5 316 57.6
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 5.9e-96 355.1 343 56.0
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 3.8e-95 352.4 335 63.9
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 8.5e-95 351.3 321 62.6
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 2.5e-94 349.7 339 54.9
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.2e-94 349.4 344 52.9
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.2e-93 347.4 305 68.5
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.2e-93 347.4 300 58.3
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.4e-92 344.0 333 62.8
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 5.1e-92 342.0 327 52.9
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 1.5e-91 340.5 333 62.5
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 1.5e-91 340.5 335 63.3
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 2.6e-91 339.7 313 56.2
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 5.7e-91 338.6 320 63.8
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 7.4e-91 338.2 333 60.4
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 1.7e-90 337.0 333 55.0
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.7e-90 337.0 342 56.7
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.7e-90 337.0 323 64.4
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 2.8e-90 336.3 333 59.5
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.8e-90 336.3 333 54.7
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 3.7e-90 335.9 333 61.9
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 6.3e-90 335.1 333 54.1
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 2.4e-89 333.2 319 62.7
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 4.1e-89 332.4 319 63.3
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 7.0e-89 331.6 319 62.4
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.2e-88 330.9 333 60.7
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 1.5e-88 330.5 319 62.1
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 2.6e-88 329.7 319 62.4
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 3.5e-88 329.3 319 63.0
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.6e-85 320.5 333 51.1
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 2.1e-85 320.1 331 60.4
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 2.7e-85 319.7 321 51.4
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 4.7e-85 318.9 317 52.4
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 8.0e-85 318.2 320 61.6
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 1.4e-84 317.4 323 52.3
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 1.8e-84 317.0 324 57.7
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 3.0e-84 316.2 315 61.0
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 3.0e-84 316.2 320 61.2
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 3.9e-84 315.8 333 59.5
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 3.9e-84 315.8 333 59.5
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.1e-83 314.3 315 60.3
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 2.6e-83 313.2 345 58.0
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 7.4e-83 311.6 317 51.1
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.7e-82 309.3 314 59.2
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 3.1e-81 306.2 343 49.6
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.1e-81 305.8 313 51.4
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.0e-80 303.5 335 49.3
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 3.5e-80 302.8 336 51.8
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 5.9e-80 302.0 336 58.0
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 2.5e-78 296.6 201 76.1
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 8.0e-77 291.6 330 47.9
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 6.3e-74 282.0 316 58.2
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 8.3e-74 281.6 316 48.7
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.4e-73 280.8 184 75.5
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 7.0e-73 278.5 320 46.2
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 3.5e-72 276.2 296 48.3
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 3.7e-66 256.1 317 54.3
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 3.3e-62 243.0 231 64.5
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.3e-55 220.3 242 49.6
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 5.6e-54 215.7 161 71.4
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 8.3e-50 201.8 163 67.5
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 1.2e-35 154.8 170 51.8
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.9e-33 147.5 113 63.7
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 6.0e-32 142.5 183 61.2
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.1e-28 131.7 177 43.5
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 9.9e-27 125.2 97 61.9
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.9e-26 123.6 108 62.0
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.5e-19 101.3 106 46.2
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.5e-11 74.7 115 39.1
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 4.6e-08 63.2 65 52.3


User provided reference genes

Program Settings