Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0010677 Lotus japonicus HOM05D000003 ORTHO05D000022 4.8e-154 547.7 265 100.0
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 1.0e-31 141.4 137 53.3
Lj1g0006975 Lotus japonicus HOM05D000100 ORTHO05D000052 7.7e-19 98.6 159 39.6
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 9.7e-14 81.6 138 31.9
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-13 79.3 138 32.6
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 1.4e-12 77.8 125 35.2
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 3.1e-12 76.6 138 34.1
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-12 76.3 136 30.1
Lalb_Chr17g0341421 Lupinus albus HOM05D014548 ORTHO05D016940 4.1e-12 76.3 131 35.9
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 5.3e-12 75.9 175 27.4
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-11 72.4 136 31.6
Lj3g0003007 Lotus japonicus HOM05D000003 ORTHO05D000022 5.9e-11 72.4 124 34.7
Lj3g0007232 Lotus japonicus HOM05D000003 ORTHO05D000126 7.7e-11 72.0 142 32.4
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-10 71.6 142 31.0
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-10 71.2 135 29.6
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-10 71.2 136 30.9
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-10 70.1 162 29.6
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-10 69.7 137 27.0
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-10 69.7 137 28.5
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-10 69.7 138 27.5
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-10 69.7 142 30.3
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 5.0e-10 69.3 125 30.4
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 6.5e-10 68.9 166 27.7
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 1.1e-09 68.2 148 31.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-09 67.8 135 28.1
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-09 67.4 134 26.9
Eucgr.B00585 Eucalyptus grandis HOM05D000003 ORTHO05D000022 1.9e-09 67.4 136 29.4
Peaxi162Scf00015g00940 Petunia axillaris HOM05D000145 ORTHO05D000115 1.9e-09 67.4 129 34.1
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-09 66.2 151 27.8
Nitab4.5_0007388g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000022 4.2e-09 66.2 128 32.8
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 7.2e-09 65.5 119 33.6
vmacro00419 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 7.2e-09 65.5 123 31.7
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 9.4e-09 65.1 135 30.4
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 9.4e-09 65.1 129 31.0
arahy.Tifrunner.gnm1.ann1.CIE5KM Arachis hypogaea HOM05D000003 ORTHO05D000022 1.2e-08 64.7 163 30.1
Actinidia37600 Actinidia chinensis HOM05D025569 ORTHO05D000022 1.6e-08 64.3 99 34.3
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-08 63.9 126 30.2
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-08 63.9 126 27.8
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-08 63.9 126 27.8
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-08 63.5 138 26.1
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-08 63.5 132 27.3
Atru.chr1.1867 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-08 63.2 118 26.3
arahy.Tifrunner.gnm1.ann1.Y0B8H2 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.6e-08 63.2 129 32.6
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.6e-08 63.2 137 27.7
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-08 62.8 133 25.6
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-08 62.4 135 25.9
Nitab4.5_0007519g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000022 7.9e-08 62.0 127 31.5
Os03g0158600 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 7.9e-08 62.0 133 30.8
Gorai.013G086700 Gossypium raimondii HOM05D000003 ORTHO05D000022 1.0e-07 61.6 158 30.4
Nitab4.5_0007388g0070 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.4e-07 61.2 128 32.0
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 2.3e-07 60.5 133 30.8
VMungo0434G0001 Vigna mungo HOM05D014548 ORTHO05D016940 2.3e-07 60.5 139 30.9
Nitab4.5_0000222g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000022 3.9e-07 59.7 125 31.2
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 3.9e-07 59.7 95 31.6
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 5.1e-07 59.3 135 29.6
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 6.7e-07 58.9 135 28.9
FvH4_6g42230 Fragaria vesca HOM05D000003 ORTHO05D000022 8.8e-07 58.5 163 26.4
Nitab4.5_0007388g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 8.8e-07 58.5 93 37.6
Os06g0683500 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 8.8e-07 58.5 129 30.2
RcHm_v2.0_Chr6g0266871 Rosa chinensis HOM05D000003 ORTHO05D000022 8.8e-07 58.5 139 24.5
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-06 58.2 104 32.7
QL03p058466 Quercus lobata HOM05D000003 ORTHO05D000022 1.1e-06 58.2 131 24.4
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-06 58.2 126 26.2
Solyc06g082170.2 Solanum lycopersicum HOM05D000314 ORTHO05D000189 1.1e-06 58.2 130 33.1
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 2.0e-06 57.4 124 26.6
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 2.6e-06 57.0 139 25.9
VMungo1080G0380 Vigna mungo HOM05D000155 ORTHO05D000022 2.6e-06 57.0 133 31.6
Peaxi162Scf00129g00613 Petunia axillaris HOM05D000003 ORTHO05D026350 3.3e-06 56.6 105 33.3
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 3.3e-06 56.6 132 25.0
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.4e-06 56.2 127 26.8
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 4.4e-06 56.2 127 26.8
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 4.4e-06 56.2 121 29.8
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-06 55.8 119 27.7
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 5.7e-06 55.8 90 34.4
Atru.chr13.2391 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-06 55.5 111 27.0
MBI14_g11704_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.4e-06 55.5 131 30.5
Nitab4.5_0014215g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000022 7.4e-06 55.5 108 31.5
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 9.7e-06 55.1 127 27.6


User provided reference genes

Program Settings