Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.2e-192 676.4 360 100.0
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 2.0e-123 446.4 329 69.6
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.6e-120 436.8 323 70.0
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 3.4e-118 429.1 324 69.8
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 4.4e-118 428.7 323 68.4
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 2.8e-112 409.5 317 66.9
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.0e-111 407.5 317 66.2
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.5e-110 403.7 345 62.9
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 3.7e-109 399.1 324 65.4
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 3.2e-108 396.0 346 60.7
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 2.1e-104 383.3 308 62.3
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 6.1e-104 381.7 326 58.6
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 5.2e-103 378.6 316 59.8
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.5e-102 377.1 317 60.6
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 3.4e-102 375.9 323 59.1
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 1.7e-101 373.6 323 58.8
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.2e-101 373.2 321 59.2
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 3.7e-101 372.5 321 57.9
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 2.4e-100 369.8 316 57.9
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 5.4e-100 368.6 327 56.6
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 6.0e-99 365.2 221 82.4
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 6.0e-99 365.2 245 75.9
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 2.5e-97 359.8 332 55.4
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 4.3e-97 359.0 331 55.3
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 4.3e-97 359.0 330 57.0
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 7.3e-97 358.2 316 56.0
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 1.2e-96 357.5 325 56.9
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 8.1e-96 354.8 327 56.0
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 4.0e-95 352.4 317 55.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 4.0e-95 352.4 326 55.2
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 4.0e-95 352.4 327 55.7
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 3.4e-94 349.4 330 55.5
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.4e-94 349.4 319 55.2
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 7.5e-94 348.2 321 56.4
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 9.8e-94 347.8 316 56.0
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.3e-93 347.4 332 55.1
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 1.7e-93 347.1 326 54.6
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 2.4e-92 343.2 326 52.1
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 3.2e-92 342.8 240 68.8
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 4.1e-92 342.4 329 54.4
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.2e-91 340.9 320 55.3
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 2.1e-91 340.1 311 54.0
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 1.0e-90 337.8 326 51.8
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 1.7e-90 337.0 326 53.1
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.1e-89 334.3 350 48.0
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 6.2e-88 328.6 323 51.7
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.1e-87 327.8 319 51.1
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.1e-87 327.8 297 57.6
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 2.3e-87 326.6 316 51.6
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 3.1e-87 326.2 319 51.1
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 2.0e-86 323.6 319 50.8
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.0e-86 323.6 298 56.7
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 5.8e-86 322.0 319 51.1
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 7.6e-86 321.6 319 50.8
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 2.2e-85 320.1 316 51.3
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.7e-85 319.3 319 50.5
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 2.4e-84 316.6 293 54.9
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 5.4e-84 315.5 320 50.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 5.4e-84 315.5 319 48.9
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 1.6e-83 313.9 312 50.0
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.7e-82 310.5 319 48.0
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 2.3e-82 310.1 221 69.2
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.1e-81 307.8 319 48.0
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.1e-81 307.8 243 61.7
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.9e-81 307.0 319 47.6
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 4.3e-81 305.8 311 50.5
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 5.6e-81 305.4 218 67.9
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 1.6e-80 303.9 317 48.3
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 6.8e-79 298.5 321 47.7
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 5.8e-78 295.4 311 47.9
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 7.6e-78 295.0 311 47.9
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.7e-77 293.9 319 48.9
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 4.9e-77 292.4 311 47.6
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 3.2e-76 289.7 326 46.9
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.2e-75 287.7 380 44.7
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.6e-75 287.3 319 48.3
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 1.7e-74 283.9 323 44.3
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.9e-73 280.4 351 46.2
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 5.6e-73 278.9 299 49.8
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.1e-71 274.6 271 52.4
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.2e-70 271.2 269 51.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 3.2e-68 263.1 352 42.9
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 6.0e-67 258.8 326 45.1
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 2.8e-64 250.0 209 58.4
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 1.0e-58 231.5 345 42.9
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.8e-58 230.7 325 36.6
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 5.8e-54 215.7 211 49.8
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 1.0e-50 204.9 184 58.2
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.3e-50 204.5 306 42.8
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 3.0e-50 203.4 211 49.8
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.9e-49 200.7 260 45.4
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 3.1e-47 193.4 123 70.7
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 3.8e-45 186.4 316 36.4
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 6.7e-42 175.6 126 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 2.8e-40 170.2 317 33.8
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.7e-37 161.0 126 58.7
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 7.9e-35 152.1 97 73.2
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.8e-32 143.7 197 41.1
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.1e-31 141.7 92 72.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.4e-26 124.8 162 37.7
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 5.7e-25 119.4 82 67.1
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 3.7e-24 116.7 321 28.7
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 4.5e-22 109.8 89 59.6
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.7e-22 109.0 89 59.6
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 5.7e-17 92.8 83 54.2
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-15 88.2 164 37.8
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-15 88.2 164 37.8
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.6e-14 84.7 85 50.6
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 4.5e-14 83.2 54 64.8
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.9e-13 80.5 158 36.1
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 6.5e-13 79.3 67 52.2
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 5.5e-12 76.3 83 47.0
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 6.1e-11 72.8 221 27.6
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.8e-10 71.2 154 33.1
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 3.0e-10 70.5 138 37.0
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.4e-07 60.8 47 61.7
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 2.0e-06 57.8 45 62.2


User provided reference genes

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