Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1860.1 914 100.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1521.1 908 82.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1489.9 916 80.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1489.2 913 80.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1481.5 913 80.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1458.4 938 77.5
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1453.7 915 78.9
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1441.4 894 80.1
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1403.3 932 75.9
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1361.3 1018 69.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1301.6 936 70.5
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1276.2 933 69.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1266.9 933 68.5
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1257.7 932 69.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1257.3 935 67.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1251.5 923 68.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1246.1 928 68.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1240.7 939 66.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1239.9 985 64.7
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1233.4 927 67.5
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1233.0 932 67.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1230.3 941 66.5
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 951 65.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1225.7 951 65.8
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1221.8 946 66.3
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1221.5 961 65.1
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1219.1 933 66.9
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1217.6 961 65.3
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 946 65.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1214.9 931 66.1
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1213.7 947 66.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1206.0 910 67.4
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1200.3 922 66.4
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 942 65.4
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1193.7 917 66.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 957 64.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 930 65.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1180.6 917 65.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 925 64.4
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1176.8 920 64.6
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 926 64.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1165.6 926 64.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 916 63.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1161.0 920 64.9
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 928 63.7
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 922 62.8
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 977 61.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1146.3 937 63.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 995 60.8
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 927 64.2
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 987 60.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 921 62.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1134.0 987 59.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 987 59.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 979 59.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 916 63.4
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 950 60.1
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 945 61.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 1030 59.8
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 939 60.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 924 62.9
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 928 63.0
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 939 62.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 869 66.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 928 61.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 928 61.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 936 63.0
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 882 64.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 928 61.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 932 61.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 964 60.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 924 61.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 928 61.2
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 928 61.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 931 60.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1105.9 941 60.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 945 60.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 905 62.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 926 61.2
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 926 61.2
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 936 62.0
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 937 63.1
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 963 59.7
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 947 60.1
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 923 61.1
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 1057 56.5
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 956 61.0
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 911 61.7
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 948 60.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 916 60.2
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 802 67.8
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 933 60.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 839 64.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 4.8e-310 1067.8 1054 55.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.7e-307 1058.1 916 59.8
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.4e-306 1056.2 908 59.4
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.9e-306 1055.8 925 60.3
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 9.2e-306 1053.5 852 63.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 9.2e-306 1053.5 889 61.4
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.5e-305 1051.6 936 59.6
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-304 1048.9 889 61.3
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.1e-301 1040.0 942 58.3
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.2e-300 1036.6 858 62.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 910 58.9
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 1035 54.0
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.1e-295 1020.0 902 59.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.8e-294 1014.6 964 56.8
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.8e-293 1012.7 918 59.6
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.4e-293 1012.3 958 57.3
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 9.6e-287 990.3 1160 49.6
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.9e-283 978.0 799 62.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 9.6e-279 963.8 923 57.3
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.8e-262 909.1 768 62.6
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 6.5e-259 897.9 942 53.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.0e-256 889.0 922 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.8e-253 879.8 885 53.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.1e-250 870.5 967 49.3
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 2.7e-249 865.9 761 58.6
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.4e-248 863.6 703 64.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.7e-247 858.2 822 54.0
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.3e-239 832.4 1062 43.6
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 5.9e-220 768.5 720 57.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-199 701.0 618 59.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.1e-197 691.8 660 57.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.3e-187 661.0 409 78.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.1e-186 657.9 754 49.6
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.0e-156 555.8 352 76.7
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.9e-156 555.4 398 71.1
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 8.7e-155 552.0 392 70.9
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-143 514.6 466 59.9
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.1e-133 481.9 615 47.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.2e-133 479.9 709 41.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-124 451.8 561 46.3
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.6e-124 451.4 284 76.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.6e-119 434.9 279 75.3
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.3e-118 431.8 478 50.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 9.8e-114 415.6 282 69.1
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 7.7e-103 379.4 327 58.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.4e-98 363.6 317 56.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-91 342.0 206 79.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 7.9e-55 219.9 155 69.7
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.1e-52 209.9 216 50.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-49 202.6 138 67.4
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.6e-47 194.1 129 70.5
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-43 182.6 112 75.9
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.5e-34 151.0 160 48.1
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.5e-34 151.0 275 40.4
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.6e-34 150.2 99 70.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.9e-31 140.2 76 86.8
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.9e-29 135.6 114 57.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.9e-26 124.0 86 64.0
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.4e-18 98.2 66 72.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.1e-16 93.2 160 39.4
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.2e-16 91.3 68 67.6
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 4.7e-15 87.8 267 30.3
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.9e-14 84.7 89 52.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.6e-13 82.0 56 75.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.8e-12 77.8 126 34.9
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.7e-10 70.5 62 56.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.2e-09 68.9 68 50.0
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.0e-09 67.8 69 47.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 6.5e-09 67.4 35 85.7
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.9e-08 65.9 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.9e-08 65.9 53 56.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.2e-08 65.1 53 56.6
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.2e-08 64.7 49 61.2
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 5.5e-08 64.3 146 33.6
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.2e-08 63.9 52 61.5
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 1.8e-06 59.3 32 81.2


User provided reference genes

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