Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009875 Lotus japonicus HOM05D003067 ORTHO05D007251 2.8e-64 248.4 125 100.0
Lj4g0016734 Lotus japonicus HOM05D003067 ORTHO05D007251 1.7e-45 186.0 160 65.6
VMungo1215G2568 Vigna mungo HOM05D003067 ORTHO05D007251 4.2e-44 181.4 160 63.8
Glyma.13G154800 Glycine max HOM05D003067 ORTHO05D007251 7.2e-44 180.6 160 63.1
Dinv42885 Davidia involucrata HOM05D003067 ORTHO05D007251 1.2e-43 179.9 160 63.1
Dinv43215 Davidia involucrata HOM05D003067 ORTHO05D007251 1.2e-43 179.9 160 63.1
AL2G11880 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 2.1e-43 179.1 160 63.8
AL2G11970 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 2.1e-43 179.1 160 63.8
AL2G12000 Arabidopsis lyrata HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
AT1G63270 Arabidopsis thaliana HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
A09p15540 Brassica napus HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
BraA09t37194Z Brassica rapa HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
Carub.0002s0155 Capsella rubella HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
Thhalv10023673m.g Eutrema salsugineum HOM05D003067 ORTHO05D007251 2.1e-43 179.1 160 63.8
BcaB07g31398 Brassica carinata HOM05D003067 ORTHO05D007251 2.7e-43 178.7 160 63.8
BcaC04g22483 Brassica carinata HOM05D003067 ORTHO05D007251 2.7e-43 178.7 160 63.1
C09p18790 Brassica napus HOM05D003067 ORTHO05D007251 2.7e-43 178.7 160 63.1
BolC9t54781H Brassica oleracea HOM05D003067 ORTHO05D007251 2.7e-43 178.7 160 63.1
CARHR048140 Cardamine hirsuta HOM05D003067 ORTHO05D007251 2.7e-43 178.7 160 63.1
Cc06_g15250 Coffea canephora HOM05D003067 ORTHO05D007251 6.1e-43 177.6 160 62.5
Psat4g008800 Pisum sativum HOM05D003067 ORTHO05D007251 6.1e-43 177.6 160 61.9
Atru.chr7.135 Acer truncatum HOM05D003067 ORTHO05D007251 1.0e-42 176.8 160 62.5
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 1.0e-42 176.8 160 61.9
Sabra18G0093200 Salix brachista HOM05D003067 ORTHO05D007251 1.0e-42 176.8 160 61.9
EL10Ac3g05662 Beta vulgaris HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 61.9
EL10Ac9g22772 Beta vulgaris HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 61.9
CSS0017292 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 61.9
CSS0043589 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 61.9
Eucgr.C00365 Eucalyptus grandis HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 61.9
Sp2g01250 Schrenkiella parvula HOM05D003067 ORTHO05D007251 1.4e-42 176.4 160 63.1
Cpa.g.sc46.128 Carica papaya HOM05D003067 ORTHO05D007251 1.8e-42 176.0 160 61.9
Sed0009590 Sechium edule HOM05D003067 ORTHO05D007251 1.8e-42 176.0 160 61.9
Thecc.09G033800 Theobroma cacao HOM05D003067 ORTHO05D007251 1.8e-42 176.0 160 61.9
Ca_21111_v3 Cicer arietinum L. HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.9
Haze_19236 Corylus avellana HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.2
Duzib187G1913 Durio zibethinus HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.2
Oeu021254.1 Olea europaea HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.2
Peaxi162Scf00108g00073 Petunia axillaris HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.9
Potri.018G110200 Populus trichocarpa HOM05D003067 ORTHO05D007251 2.3e-42 175.6 160 61.2
Medtr4g131330 Medicago truncatula HOM05D003067 ORTHO05D007251 3.0e-42 175.3 160 61.9
Solyc12g010220.3 Solanum lycopersicum HOM05D003067 ORTHO05D007251 3.0e-42 175.3 160 61.2
THA.LOC104822364 Tarenaya hassleriana HOM05D003067 ORTHO05D007251 3.0e-42 175.3 160 61.2
Sopen12g005110 Solanum pennellii HOM05D003067 ORTHO05D007251 4.0e-42 174.9 160 61.2
CAN.G551.29 Capsicum annuum HOM05D003067 ORTHO05D007251 5.2e-42 174.5 160 61.2
Migut.C01262 Erythranthe guttata HOM05D003067 ORTHO05D007251 5.2e-42 174.5 160 61.9
Lj7P455T22 Lonicera japonica HOM05D003067 ORTHO05D007251 5.2e-42 174.5 160 61.2
AUR62035264 Chenopodium quinoa HOM05D003067 ORTHO05D007251 6.8e-42 174.1 160 61.2
ClCG10G005110 Citrullus lanatus HOM05D003067 ORTHO05D007251 6.8e-42 174.1 160 61.9
DCAR_014818 Daucus carota HOM05D003067 ORTHO05D007251 6.8e-42 174.1 160 61.2
QL02p092650 Quercus lobata HOM05D003067 ORTHO05D007251 6.8e-42 174.1 160 60.6
Lalb_Chr19g0125941 Lupinus albus HOM05D003067 ORTHO05D007251 8.8e-42 173.7 160 61.2
Manes.14G111800 Manihot esculenta HOM05D003067 ORTHO05D007251 1.2e-41 173.3 160 60.6
MSTRG.11189 Avicennia marina HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.6
Ciclev10009382m.g Citrus clementina HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 61.2
ECA234G4787 Erigeron canadensis HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.0
Gohir.D10G035400 Gossypium hirsutum HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.6
Gorai.011G037200 Gossypium raimondii HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.6
HanXRQChr10g0314651 Helianthus annuus HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.0
Hma1.2p1_0222F.1_g093300 Hydrangea macrophylla HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.6
Peaxi162Scf00177g00916 Petunia axillaris HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 61.2
PGSC0003DMG400007895 Solanum tuberosum HOM05D003067 ORTHO05D007251 1.5e-41 172.9 160 60.6
BolC1t03287H Brassica oleracea HOM05D003067 ORTHO05D007251 2.0e-41 172.6 150 65.3
CiPaw.15G174100 Carya illinoinensis HOM05D003067 ORTHO05D007251 3.4e-41 171.8 160 60.6
Nitab4.5_0001478g0100 Nicotiana tabacum HOM05D003067 ORTHO05D007251 3.4e-41 171.8 160 60.6
Nitab4.5_0002315g0050 Nicotiana tabacum HOM05D003067 ORTHO05D007251 3.4e-41 171.8 160 60.6
Gohir.A10G034666 Gossypium hirsutum HOM05D003067 ORTHO05D007251 5.7e-41 171.0 160 60.0
SGA_v2.0_scaffold223G42827 Striga asiatica HOM05D003067 ORTHO05D007251 5.7e-41 171.0 160 60.0
PGR142G0687 Punica granatum HOM05D003067 ORTHO05D007251 7.5e-41 170.6 160 58.1
Rhsim01G0045000 Rhododendron simsii HOM05D003067 ORTHO05D007251 9.8e-41 170.2 160 60.6
RhsimUnG0172000 Rhododendron simsii HOM05D003067 ORTHO05D007251 9.8e-41 170.2 160 60.6
Sc18g0006940 Simmondsia chinensis HOM05D003067 ORTHO05D007251 9.8e-41 170.2 161 59.0
Aa31LG2G710 Aethionema arabicum HOM05D000318 ORTHO05D007251 1.7e-40 169.5 155 62.6
TPR.G39220 Trifolium pratense HOM05D003067 ORTHO05D007251 1.7e-40 169.5 160 57.5
TWI34G0114 Tripterygium wilfordii HOM05D003067 ORTHO05D007251 1.7e-40 169.5 160 58.1
COL.COLO4_18775 Corchorus olitorius HOM05D003067 ORTHO05D007251 2.2e-40 169.1 160 59.4
CsaV3_3G004790 Cucumis sativus L. HOM05D003067 ORTHO05D007251 2.8e-40 168.7 160 59.4
MELO3C014177.2 Cucumis melo HOM05D003067 ORTHO05D007251 3.7e-40 168.3 160 59.4
SHI31898 Sapria himalayana HOM05D003067 ORTHO05D007251 3.7e-40 168.3 160 58.8
FvH4_1g01200 Fragaria vesca HOM05D003067 ORTHO05D007251 4.8e-40 167.9 160 58.8
FAN19G2760 Fragaria x ananassa HOM05D003067 ORTHO05D007251 4.8e-40 167.9 160 58.8
FAN23G0234 Fragaria x ananassa HOM05D003067 ORTHO05D007251 4.8e-40 167.9 160 58.8
FAN28G1587 Fragaria x ananassa HOM05D003067 ORTHO05D007251 4.8e-40 167.9 160 58.8
Nn4g26426 Nelumbo nucifera HOM05D003067 ORTHO05D007251 6.3e-40 167.5 160 59.4
Prupe.7G259900 Prunus persica HOM05D003067 ORTHO05D007251 6.3e-40 167.5 160 58.1
Aqoxy2G01213 Aquilegia oxysepala HOM05D003067 ORTHO05D007251 8.3e-40 167.2 160 58.8
MD02G1010200 Malus domestica HOM05D003067 ORTHO05D007251 1.1e-39 166.8 160 58.1
RcHm_v2.0_Chr2g0086001 Rosa chinensis HOM05D003067 ORTHO05D007251 1.1e-39 166.8 160 58.1
FvH4_1g01210 Fragaria vesca HOM05D003067 ORTHO05D007251 1.4e-39 166.4 160 58.1
Aqoxy5G03664 Aquilegia oxysepala HOM05D003067 ORTHO05D007251 1.8e-39 166.0 160 58.8
TAR383G0409 Trochodendron aralioides HOM05D003067 ORTHO05D007251 1.6e-38 162.9 160 56.9
HPP92_015883 Vanilla planifolia HOM05D003067 ORTHO05D007251 2.7e-38 162.2 161 57.1
MBI02_g23954_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D007251 3.5e-38 161.8 160 57.5
PSO063G5563 Papaver somniferum HOM05D003067 ORTHO05D007251 1.3e-37 159.8 160 56.9
Actinidia04284 Actinidia chinensis HOM05D003067 ORTHO05D007251 2.3e-37 159.1 159 57.2
PSO063G0174 Papaver somniferum HOM05D003067 ORTHO05D007251 2.3e-37 159.1 160 56.2
PSO339G4470 Papaver somniferum HOM05D003067 ORTHO05D007251 2.3e-37 159.1 160 56.2
PSO384G1039 Papaver somniferum HOM05D003067 ORTHO05D007251 2.3e-37 159.1 160 56.2
Os04g0627200 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D007251 5.0e-37 157.9 160 57.5
CDE04G0735 Ceratophyllum demersum HOM05D003067 ORTHO05D007251 8.6e-37 157.1 160 56.2
GSVIVG01033294001 Vitis vinifera HOM05D003067 ORTHO05D007251 8.6e-37 157.1 160 53.1
Zm00001eb431360 Zea mays HOM05D003067 ORTHO05D007251 3.3e-36 155.2 161 55.9
MBI02_g23956_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D007251 8.0e-35 150.6 160 55.0
unitig_32.g11754 Utricularia gibba HOM05D003067 ORTHO05D007251 1.0e-34 150.2 156 53.8
Zm00001eb069730 Zea mays HOM05D003067 ORTHO05D007251 1.4e-34 149.8 162 54.3
Zm00001eb069940 Zea mays HOM05D003067 ORTHO05D007251 1.4e-34 149.8 162 54.3
MD00G1161600 Malus domestica HOM05D003067 ORTHO05D007251 5.2e-34 147.9 160 52.5
Zm00001eb069870 Zea mays HOM05D003067 ORTHO05D007251 5.2e-34 147.9 162 54.3
Gohir.D06G096900 Gossypium hirsutum HOM05D003067 ORTHO05D007251 5.4e-31 137.9 160 52.5
ATR0680G235 Amborella trichopoda HOM05D003067 ORTHO05D007251 1.0e-29 133.7 160 48.8
Hund26544 Selenicereus undatus HOM05D003067 ORTHO05D007251 1.0e-29 133.7 136 57.4
Dinv41399 Davidia involucrata HOM05D003067 ORTHO05D007251 2.9e-29 132.1 133 57.9
MD15G1155200 Malus domestica HOM05D003067 ORTHO05D007251 2.9e-29 132.1 122 59.8
Phvul.003G157800 Phaseolus vulgaris HOM05D003067 ORTHO05D007251 1.2e-25 120.2 124 55.6
Mapoly0096s0064 Marchantia polymorpha HOM05D003067 ORTHO05D007251 2.6e-25 119.0 160 41.9
Gorai.010G111900 Gossypium raimondii HOM05D003067 ORTHO05D007251 1.1e-23 113.6 124 54.0
Peaxi162Scf00108g00811 Petunia axillaris HOM05D003067 ORTHO05D007251 9.2e-23 110.5 132 50.0
Oeu043498.1 Olea europaea HOM05D003067 ORTHO05D007251 1.6e-22 109.8 120 55.8
arahy.Tifrunner.gnm1.ann1.8U5735 Arachis hypogaea HOM05D003067 ORTHO05D007251 1.0e-21 107.1 74 71.6
Pp3c16_5430 Physcomitrium patens HOM05D003067 ORTHO05D007251 1.0e-21 107.1 160 39.4
Zm00001eb070010 Zea mays HOM05D003067 ORTHO05D007251 5.6e-20 101.3 85 61.2
Zm00001eb069890 Zea mays HOM05D003067 ORTHO05D007251 1.2e-19 100.1 126 50.0
Nitab4.5_0001812g0050 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.1e-15 87.0 137 46.7
SEGI_33800 Sequoiadendron giganteum HOM05D003067 ORTHO05D007251 5.4e-15 84.7 81 46.9
Nitab4.5_0007909g0020 Nicotiana tabacum HOM05D003067 ORTHO05D007251 9.2e-15 84.0 81 58.0
Actinidia38340 Actinidia chinensis HOM05D003779 ORTHO05D007251 5.6e-12 74.7 55 74.5
Zm00001eb069810 Zea mays HOM05D003067 ORTHO05D007251 3.6e-11 72.0 54 74.1
Nitab4.5_0007909g0030 Nicotiana tabacum HOM05D003067 ORTHO05D007251 1.2e-09 67.0 41 85.4
Ca_29375_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 2.0e-09 66.2 152 31.6
SEGI_15801 Sequoiadendron giganteum HOM05D003067 ORTHO05D007251 2.6e-09 65.9 56 60.7
Haze_26995 Corylus avellana HOM05D000068 ORTHO05D011688 4.4e-09 65.1 147 32.0
CBR_g47104 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-09 64.3 52 55.8
arahy.Tifrunner.gnm1.ann1.X1G7ME Arachis hypogaea HOM05D003067 ORTHO05D007251 6.4e-08 61.2 41 78.0
Ca_28622_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 3.5e-06 55.5 162 28.4
QL06p008243 Quercus lobata HOM05D000068 ORTHO05D000084 3.5e-06 55.5 123 29.3
Medtr1567s0010 Medicago truncatula HOM05D000068 ORTHO05D011688 6.0e-06 54.7 143 28.7
Ca_29125_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 7.8e-06 54.3 151 27.2


User provided reference genes

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