Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.4e-69 266.2 137 100.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.5e-47 193.0 138 73.2
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.2e-45 184.1 138 69.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 7.9e-44 180.6 138 69.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 7.4e-42 174.1 138 66.7
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 7.7e-39 164.1 140 65.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.7e-38 162.9 132 65.2
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 8.5e-38 160.6 140 62.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.9e-37 159.5 138 62.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.5e-37 159.1 138 60.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.1e-36 154.5 139 63.3
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 5.1e-35 151.4 138 60.1
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 6.7e-35 151.0 129 64.3
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 7.4e-34 147.5 138 60.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.2e-33 146.0 139 59.0
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.0e-32 141.0 129 53.5
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.0e-31 139.4 125 56.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.0e-31 139.4 129 52.7
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-31 139.4 129 52.7
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.6e-31 139.0 124 57.3
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.6e-31 139.0 139 53.2
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.5e-31 138.7 129 52.7
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 5.9e-31 137.9 125 55.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.7e-30 136.3 129 51.9
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.2e-30 136.0 123 55.3
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.8e-30 135.2 133 56.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.5e-29 132.5 124 54.8
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.2e-29 131.7 130 56.9
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 7.2e-29 131.0 123 55.3
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.2e-28 130.2 127 52.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.6e-28 129.8 127 51.2
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.6e-28 129.8 140 51.4
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 2.1e-28 129.4 138 55.1
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.7e-28 129.0 134 55.2
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.9e-27 125.2 129 50.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.2e-27 124.8 136 50.0
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.2e-27 124.8 134 50.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-26 123.2 136 50.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-26 123.2 128 49.2
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.5e-26 123.2 125 52.0
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 3.3e-26 122.1 136 49.3
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.7e-25 119.8 131 48.1
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.8e-25 119.0 143 52.4
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 3.7e-25 118.6 126 49.2
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.3e-25 117.9 117 53.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 6.3e-25 117.9 125 52.8
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 6.3e-25 117.9 132 47.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.1e-24 115.5 135 48.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-24 115.5 117 51.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.1e-24 115.2 126 50.8
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 4.1e-24 115.2 123 52.8
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.0e-24 114.4 127 48.0
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.1e-24 114.0 117 52.1
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.6e-23 112.5 127 46.5
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.9e-23 111.3 123 45.5
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.2e-22 109.4 112 58.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.9e-22 109.0 125 46.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 6.5e-22 107.8 138 47.8
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.5e-22 107.5 135 45.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 8.5e-22 107.5 136 47.8
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 8.5e-22 107.5 123 45.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.9e-21 106.3 136 44.9
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.5e-21 105.9 122 48.4
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.2e-20 103.6 124 47.6
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 4.7e-20 101.7 120 44.2
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.1e-20 101.3 126 47.6
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 6.1e-20 101.3 137 48.2
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 2.3e-19 99.4 122 45.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.0e-19 99.0 131 42.7
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.2e-19 98.2 126 46.8
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.2e-19 98.2 132 41.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 6.8e-19 97.8 107 46.7
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.0e-18 96.3 135 40.0
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.7e-17 93.2 86 59.3
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.2e-17 92.8 137 40.1
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.7e-17 92.0 138 41.3
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.7e-17 92.0 105 43.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.7e-17 92.0 101 43.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.3e-17 91.3 126 40.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 8.3e-17 90.9 119 45.4
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.1e-16 90.5 130 40.8
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.1e-16 90.5 138 41.3
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.4e-16 90.1 124 40.3
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.1e-16 89.0 127 43.3
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 7.0e-16 87.8 113 49.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-15 87.0 131 42.0
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.2e-15 87.0 135 40.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.6e-15 86.7 125 44.0
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.5e-15 85.5 133 39.8
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 4.5e-15 85.1 102 47.1
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.9e-15 84.7 128 40.6
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.7e-14 83.2 128 37.5
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.7e-14 83.2 122 36.9
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.2e-14 82.8 122 36.9
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 6.5e-14 81.3 132 38.6
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.5e-14 81.3 108 42.6
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.9e-13 79.7 125 38.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.2e-13 79.0 128 37.5
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 7.2e-13 77.8 111 45.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.2e-12 77.0 105 41.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 3.6e-12 75.5 111 42.3
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.6e-12 75.5 122 42.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.7e-12 75.1 111 41.4
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-11 73.6 105 39.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-11 73.6 106 41.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.4e-11 73.6 105 39.0
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.4e-11 73.6 95 47.4
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.8e-11 73.2 110 40.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.8e-11 73.2 111 44.1
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.8e-11 73.2 107 40.2
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.3e-11 72.8 109 39.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 8.8e-11 70.9 106 42.5
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.5e-10 70.1 103 39.8
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 3.4e-10 68.9 113 42.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.4e-10 68.9 131 39.7
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 5.7e-10 68.2 130 33.8
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 2.2e-09 66.2 127 40.9
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.2e-09 66.2 115 37.4
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.2e-09 66.2 115 37.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 6.3e-09 64.7 103 37.9
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 6.3e-09 64.7 139 36.7
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 6.3e-09 64.7 103 37.9
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 6.3e-09 64.7 139 36.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 8.3e-09 64.3 103 36.9
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.2e-07 60.5 133 34.6
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.2e-07 60.5 135 34.1
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.6e-07 60.1 142 36.6
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 5.9e-07 58.2 113 37.2
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.7e-06 56.6 116 34.5
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 3.8e-06 55.5 125 36.0
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.8e-06 55.5 124 33.1
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 5.0e-06 55.1 144 33.3
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 8.6e-06 54.3 116 33.6


User provided reference genes

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