Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 1.2e-40 169.5 89 100.0
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 3.8e-31 137.9 89 79.8
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 1.5e-30 136.0 87 78.2
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 1.9e-30 135.6 87 78.2
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 2.5e-30 135.2 89 78.7
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 2.1e-29 132.1 89 74.2
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 2.7e-29 131.7 89 73.0
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 2.7e-29 131.7 89 74.2
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 4.7e-29 131.0 89 77.5
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 4.7e-29 131.0 89 75.3
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 6.1e-29 130.6 84 77.4
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 6.1e-29 130.6 84 77.4
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 6.1e-29 130.6 89 75.3
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 8.0e-29 130.2 89 75.3
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 1.0e-28 129.8 89 75.3
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 1.0e-28 129.8 89 75.3
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 1.8e-28 129.0 89 74.2
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 8.8e-28 126.7 89 74.2
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 1.5e-27 125.9 89 68.5
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 3.3e-27 124.8 89 74.2
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 7.5e-27 123.6 87 72.4
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 7.5e-27 123.6 86 69.8
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 7.5e-27 123.6 88 69.3
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 9.7e-27 123.2 88 72.7
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 9.7e-27 123.2 89 69.7
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 9.7e-27 123.2 89 70.8
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 9.7e-27 123.2 89 68.5
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 9.7e-27 123.2 88 69.3
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 1.3e-26 122.9 88 69.3
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 1.7e-26 122.5 89 69.7
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 1.7e-26 122.5 86 70.9
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 2.2e-26 122.1 88 67.0
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 2.8e-26 121.7 89 70.8
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 6.3e-26 120.6 87 69.0
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 6.3e-26 120.6 88 71.6
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 8.3e-26 120.2 89 70.8
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 8.3e-26 120.2 83 71.1
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 8.3e-26 120.2 89 68.5
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 8.3e-26 120.2 89 68.5
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 1.1e-25 119.8 86 68.6
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 1.4e-25 119.4 88 71.6
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 1.4e-25 119.4 89 65.2
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 1.4e-25 119.4 83 72.3
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 1.4e-25 119.4 89 67.4
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 2.4e-25 118.6 88 68.2
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 3.1e-25 118.2 77 75.3
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 4.1e-25 117.9 89 65.2
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 5.3e-25 117.5 89 65.2
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 5.3e-25 117.5 89 65.2
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 5.3e-25 117.5 89 65.2
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 5.3e-25 117.5 89 67.4
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 5.3e-25 117.5 81 71.6
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 7.0e-25 117.1 88 64.8
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 9.1e-25 116.7 88 69.3
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 2.0e-24 115.5 88 64.8
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 2.7e-24 115.2 89 66.3
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 3.5e-24 114.8 89 67.4
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 3.5e-24 114.8 88 64.8
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 3.5e-24 114.8 77 68.8
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 4.5e-24 114.4 77 75.3
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 7.7e-24 113.6 89 64.0
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 1.0e-23 113.2 89 65.2
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 3.8e-23 111.3 89 62.9
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 5.0e-23 110.9 82 68.3
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 5.0e-23 110.9 82 68.3
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 5.0e-23 110.9 82 68.3
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 5.0e-23 110.9 89 67.4
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 8.5e-23 110.2 88 67.0
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 8.5e-23 110.2 102 58.8
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 1.1e-22 109.8 87 65.5
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 1.9e-22 109.0 82 67.1
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 1.9e-22 109.0 82 67.1
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 1.9e-22 109.0 95 66.3
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 4.2e-22 107.8 81 66.7
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 5.5e-22 107.5 95 65.3
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 1.6e-21 105.9 82 64.6
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 2.1e-21 105.5 124 51.6
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 2.7e-21 105.1 82 64.6
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 2.7e-21 105.1 82 64.6
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 2.7e-21 105.1 82 63.4
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 2.7e-21 105.1 123 49.6
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 3.6e-21 104.8 88 60.2
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 3.6e-21 104.8 82 64.6
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 8.0e-21 103.6 82 64.6
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 1.4e-20 102.8 83 66.3
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 1.8e-20 102.4 81 60.5
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 4.0e-20 101.3 82 61.0
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 5.2e-20 100.9 82 62.2
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 2.0e-19 99.0 82 63.4
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 4.4e-19 97.8 81 59.3
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 4.4e-19 97.8 71 69.0
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 7.5e-19 97.1 81 59.3
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 9.8e-19 96.7 115 52.2
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 1.4e-17 92.8 155 41.3
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 1.4e-17 92.8 155 41.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 7.0e-17 90.5 83 63.9
Pp3c9_17680 Physcomitrium patens HOM05D007133 ORTHO05D008954 2.9e-15 85.1 86 57.0
Medtr4g101060 Medicago truncatula HOM05D007133 ORTHO05D008954 3.8e-15 84.7 56 71.4
Dinv09304 Davidia involucrata HOM05D007133 ORTHO05D008954 1.1e-14 83.2 89 56.2
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 1.2e-13 79.7 58 70.7
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 2.1e-13 79.0 194 32.5
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 2.1e-13 79.0 55 72.7
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 2.8e-13 78.6 48 79.2
AagrBONN_evm.TU.Sc2ySwM_344.2738 Anthoceros agrestis HOM05D007133 ORTHO05D008954 3.6e-13 78.2 87 51.7
Mapoly0049s0103 Marchantia polymorpha HOM05D007133 ORTHO05D008954 1.8e-12 75.9 79 53.2
HPP92_001020 Vanilla planifolia HOM05D007133 ORTHO05D008954 6.8e-12 73.9 65 61.5
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 1.5e-11 72.8 49 71.4
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 7.5e-11 70.5 48 68.8
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 2.2e-10 68.9 48 66.7
Cc00_g26940 Coffea canephora HOM05D007133 ORTHO05D008954 9.2e-09 63.5 54 68.5
Rhsim01G0126100 Rhododendron simsii HOM05D007133 ORTHO05D008954 5.9e-08 60.8 42 73.8


User provided reference genes

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