Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.3e-41 172.6 83 100.0
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 2.2e-28 128.6 94 67.0
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 2.4e-27 125.2 94 66.0
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.6e-26 122.5 94 64.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 3.5e-26 121.3 92 67.4
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 2.2e-25 118.6 88 68.2
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 5.5e-24 114.0 90 61.1
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 9.4e-24 113.2 94 64.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.1e-23 112.1 87 63.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 3.6e-23 111.3 90 63.3
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 4.7e-23 110.9 91 61.5
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 4.0e-22 107.8 94 59.6
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 5.7e-21 104.0 90 56.7
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.7e-20 102.4 92 57.6
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 3.7e-20 101.3 95 55.8
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.0e-18 95.5 93 51.6
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 5.9e-18 94.0 93 50.5
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.2e-17 92.0 95 49.5
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.0e-17 90.9 97 46.4
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 6.5e-17 90.5 94 47.9
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.5e-17 90.1 97 46.4
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 5.5e-16 87.4 84 53.6
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-15 86.3 94 47.9
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.2e-15 86.3 94 48.9
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.2e-15 86.3 94 50.0
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.7e-15 85.1 94 51.1
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.6e-15 84.7 94 48.9
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 4.7e-15 84.3 94 47.9
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.7e-15 84.3 94 47.9
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 6.1e-15 84.0 94 45.7
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 6.1e-15 84.0 93 47.3
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.1e-15 84.0 105 41.9
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 6.1e-15 84.0 94 46.8
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 8.0e-15 83.6 95 41.1
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.0e-14 83.2 88 50.0
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.4e-14 82.8 93 46.2
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 2.3e-14 82.0 95 43.2
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 4.0e-14 81.3 95 43.2
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 6.8e-14 80.5 91 47.3
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 6.8e-14 80.5 90 45.6
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 6.8e-14 80.5 95 42.1
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 6.8e-14 80.5 95 42.1
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 8.8e-14 80.1 94 47.9
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.5e-13 79.3 95 49.5
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.6e-13 78.6 94 45.7
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 3.4e-13 78.2 94 43.6
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 7.5e-13 77.0 92 43.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 9.8e-13 76.6 98 40.8
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 9.8e-13 76.6 89 42.7
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 2.2e-12 75.5 91 42.9
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.2e-12 75.5 85 47.1
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.2e-12 75.5 93 44.1
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.8e-12 75.1 93 39.8
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.8e-12 75.1 96 42.7
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.7e-12 74.7 91 42.9
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 3.7e-12 74.7 94 42.6
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 4.8e-12 74.3 94 44.7
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 1.1e-11 73.2 87 42.5
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 1.1e-11 73.2 87 42.5
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 1.1e-11 73.2 87 42.5
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 1.1e-11 73.2 87 42.5
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 1.1e-11 73.2 87 42.5
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.1e-11 73.2 94 39.4
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.4e-11 72.8 91 44.0
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.8e-11 72.4 94 47.9
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 1.8e-11 72.4 89 42.7
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 2.4e-11 72.0 87 42.5
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 2.4e-11 72.0 87 42.5
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 4.1e-11 71.2 87 42.5
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 4.1e-11 71.2 87 42.5
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 4.1e-11 71.2 91 41.8
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 5.4e-11 70.9 87 42.5
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 5.4e-11 70.9 88 45.5
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 7.0e-11 70.5 97 40.2
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.0e-11 70.5 84 42.9
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 7.0e-11 70.5 83 45.8
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 9.1e-11 70.1 83 42.2
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.2e-10 69.7 87 41.4
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.2e-10 69.7 87 41.4
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 1.2e-10 69.7 87 40.2
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 1.2e-10 69.7 88 40.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.6e-10 69.3 91 41.8
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 1.6e-10 69.3 87 41.4
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 2.0e-10 68.9 88 39.8
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 2.0e-10 68.9 88 39.8
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.0e-10 68.9 88 40.9
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.5e-10 68.2 98 38.8
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 4.5e-10 67.8 90 37.8
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 4.5e-10 67.8 85 44.7
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 4.5e-10 67.8 96 41.7
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 4.5e-10 67.8 93 43.0
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 4.5e-10 67.8 93 43.0
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 5.9e-10 67.4 90 42.2
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 5.9e-10 67.4 84 41.7
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-09 66.6 84 40.5
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.3e-09 66.2 92 37.0
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.7e-09 65.9 100 37.0
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 1.7e-09 65.9 84 44.0
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.7e-09 65.9 81 39.5
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-09 65.5 98 37.8
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-09 65.5 101 36.6
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 6.5e-09 63.9 86 45.3
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.1e-08 63.2 89 44.9
Glyma.06G298400 Glycine max HOM05D004838 ORTHO05D005373 1.5e-08 62.8 83 41.0
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.5e-08 62.8 87 40.2
Lalb_Chr22g0356331 Lupinus albus HOM05D004838 ORTHO05D005373 1.9e-08 62.4 80 41.2
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 1.9e-08 62.4 87 42.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.5e-08 62.0 91 35.2
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-08 62.0 85 36.5
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.5e-08 62.0 82 37.8
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 2.5e-08 62.0 83 39.8
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 2.5e-08 62.0 90 40.0
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.2e-08 61.6 74 41.9
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 3.2e-08 61.6 88 43.2
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.2e-08 61.2 92 39.1
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.5e-08 60.8 93 41.9
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.6e-07 59.3 77 40.3
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.1e-07 58.9 92 42.4
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 2.1e-07 58.9 97 35.1
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.1e-07 58.9 79 41.8
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.7e-07 58.5 93 40.9
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 3.6e-07 58.2 88 33.0
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 4.7e-07 57.8 91 38.5
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 4.7e-07 57.8 83 36.1
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 6.1e-07 57.4 83 36.1
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 8.0e-07 57.0 88 39.8
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.0e-06 56.6 97 34.0
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 1.8e-06 55.8 88 37.5
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.8e-06 55.8 79 39.2
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.8e-06 55.8 93 31.2
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 1.8e-06 55.8 85 34.1
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 3.0e-06 55.1 87 36.8
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 3.0e-06 55.1 82 36.6
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 5.2e-06 54.3 83 34.9
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 5.2e-06 54.3 85 36.5
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.2e-06 54.3 84 42.9
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 6.8e-06 53.9 84 38.1
Lsat_1_v5_gn_3_40481 Lactuca sativa HOM05D000831 ORTHO05D000660 6.8e-06 53.9 82 34.1


User provided reference genes

Program Settings