Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.6e-129 466.1 238 100.0
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.5e-87 325.1 246 73.6
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.6e-84 315.5 238 72.3
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.6e-82 309.3 238 71.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.1e-80 302.0 242 68.2
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.2e-79 300.4 241 69.7
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 4.7e-76 288.5 236 66.9
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-75 286.6 221 71.0
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-74 283.5 231 68.4
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-74 283.1 230 68.7
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 7.5e-74 281.2 219 70.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 7.5e-74 281.2 239 66.1
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.3e-70 270.4 239 62.3
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.6e-70 267.7 231 65.4
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-68 263.5 231 64.5
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 9.8e-66 254.2 240 59.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-65 253.8 202 66.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 4.9e-65 251.9 231 61.0
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 9.2e-64 247.7 265 54.0
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-63 247.3 231 62.8
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 3.5e-63 245.7 238 58.8
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 5.9e-63 245.0 242 56.6
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.6e-62 241.1 221 59.3
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.1e-61 240.7 245 55.1
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.9e-61 240.0 245 56.3
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 7.3e-61 238.0 225 57.3
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.1e-60 236.5 243 55.1
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.6e-60 235.7 243 53.5
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 6.1e-60 235.0 237 54.4
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 8.0e-60 234.6 219 56.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.4e-59 233.8 245 54.7
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.4e-59 233.8 243 54.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.1e-59 232.6 243 54.3
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 4.0e-59 232.3 239 53.6
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.9e-59 231.1 238 54.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.2e-58 230.7 221 55.7
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.0e-58 229.9 241 57.3
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.4e-58 229.2 233 54.1
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 4.4e-58 228.8 200 59.0
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 3.7e-57 225.7 238 52.5
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.9e-57 225.3 198 59.1
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.1e-56 224.2 200 58.5
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.4e-56 223.0 233 54.1
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-56 222.6 202 62.4
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.2e-56 222.6 238 52.9
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.1e-56 222.2 172 66.9
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 5.4e-56 221.9 241 50.2
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.2e-55 220.7 236 51.7
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.2e-55 220.7 238 52.1
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 2.7e-55 219.5 234 55.6
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 7.8e-55 218.0 238 52.5
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.7e-54 216.9 243 51.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 3.0e-54 216.1 240 52.5
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 6.6e-54 214.9 235 51.5
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 6.6e-54 214.9 238 51.3
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.1e-53 214.2 109 98.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.5e-53 213.8 261 48.7
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.9e-53 213.4 239 55.2
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.3e-53 212.2 239 51.9
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.2e-52 210.7 236 49.6
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.2e-52 210.7 239 51.9
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.2e-52 210.7 292 44.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.2e-52 210.7 238 47.9
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.1e-52 209.9 244 51.2
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.1e-52 209.9 239 51.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.8e-52 209.5 234 52.6
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.7e-52 208.8 200 55.0
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.2e-52 208.4 245 51.8
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.1e-51 206.1 235 51.1
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.0e-51 205.7 233 48.9
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.2e-50 204.1 182 58.8
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 2.6e-50 203.0 239 52.3
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 3.4e-50 202.6 237 49.4
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.4e-50 202.2 233 49.4
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.5e-50 201.4 229 52.0
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.7e-49 200.3 247 46.6
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.7e-49 200.3 236 49.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-48 197.6 230 49.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-48 197.6 230 49.6
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.9e-48 196.8 239 47.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.4e-48 196.4 260 48.1
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.4e-48 196.4 236 48.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.1e-48 195.7 204 51.5
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.4e-48 195.3 193 53.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.4e-48 195.3 193 53.4
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.2e-47 194.1 218 50.9
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.2e-47 194.1 196 54.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 2.1e-47 193.4 196 51.5
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.1e-47 193.4 230 49.1
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.0e-47 191.8 237 48.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.3e-46 190.7 236 47.5
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.7e-46 190.3 237 48.5
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.7e-46 190.3 243 48.1
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.0e-46 189.5 237 51.5
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.9e-46 189.1 194 55.7
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 6.6e-46 188.3 198 58.1
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 4.3e-45 185.7 231 49.4
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-44 184.1 179 58.1
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 8.1e-44 181.4 240 47.9
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.8e-43 180.3 220 49.1
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 6.8e-43 178.3 235 46.4
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.0e-42 176.8 154 58.4
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.3e-41 174.1 243 43.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.9e-41 172.9 218 52.3
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 6.4e-41 171.8 237 47.7
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 6.4e-41 171.8 235 47.2
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.1e-40 171.0 247 46.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-40 170.2 237 46.4
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.4e-40 169.9 238 42.4
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 7.1e-40 168.3 234 46.2
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-39 167.2 173 56.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 7.8e-39 164.9 234 47.4
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.0e-38 164.5 241 43.6
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.0e-38 162.9 121 65.3
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 4.3e-37 159.1 233 44.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 7.3e-37 158.3 235 45.1
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.2e-36 157.5 154 57.1
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.1e-35 154.5 234 43.6
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 2.4e-35 153.3 243 45.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.2e-34 151.0 236 42.4
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.2e-34 151.0 154 55.2
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.4e-34 149.4 170 50.0
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 7.1e-32 141.7 161 46.6
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 6.0e-31 138.7 185 50.3
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 5.1e-30 135.6 236 40.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.1e-30 135.6 239 38.5
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.1e-29 134.4 245 38.4
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.5e-29 134.0 176 44.9
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 7.3e-29 131.7 153 47.7
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-28 129.4 132 54.5
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 8.1e-28 128.3 239 36.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.4e-27 127.5 236 38.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.8e-27 127.1 241 39.8
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.6e-26 123.2 203 37.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-26 121.7 99 63.6
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-25 120.2 95 66.3
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.9e-25 119.0 97 67.0
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.4e-25 118.2 199 37.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.9e-24 117.1 237 36.7
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-24 115.5 106 63.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 5.4e-24 115.5 228 38.6
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.6e-23 114.0 165 40.6
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-22 110.9 106 61.3
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.9e-22 109.4 217 35.0
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 9.0e-19 98.2 172 35.5
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 9.0e-19 98.2 236 37.7
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-16 91.3 82 63.4
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-16 89.7 92 59.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-14 84.0 146 39.0
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-14 82.8 106 50.0
arahy.Tifrunner.gnm1.ann1.X4R883 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-12 76.6 67 56.7
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.5e-10 70.9 92 41.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.8e-09 66.2 39 87.2
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.8e-09 66.2 50 74.0
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 3.8e-09 66.2 158 32.3
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.9e-06 56.2 74 45.9


User provided reference genes

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