Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 9.2e-87 323.6 167 100.0
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.3e-76 288.5 167 86.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 4.0e-74 281.6 168 86.9
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 5.8e-73 277.7 167 83.8
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.1e-71 273.5 167 82.0
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.9e-71 272.7 167 83.8
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.6e-70 268.1 167 80.8
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.0e-69 266.9 167 82.0
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 5.1e-69 264.6 163 84.0
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 79.6
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 79.6
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 79.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.1e-68 263.5 149 87.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.1e-68 263.5 164 80.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-68 263.1 163 81.0
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.3e-68 261.5 164 79.3
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.3e-68 260.8 167 77.8
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 9.6e-68 260.4 166 78.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.3e-67 260.0 164 78.7
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 76.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.6e-67 259.6 164 78.7
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.1e-67 259.2 164 78.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.1e-67 259.2 167 80.8
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 3.6e-67 258.5 167 76.6
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 77.2
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 77.8
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.8e-67 258.1 164 77.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.1e-66 256.9 167 76.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.1e-66 256.9 168 76.2
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.4e-66 255.8 166 76.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 9.0e-66 253.8 154 82.5
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 74.9
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 76.6
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 74.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.8e-65 251.1 167 74.9
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 74.3
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 74.3
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 74.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 74.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 9.9e-65 250.4 167 74.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.2e-64 249.2 167 74.3
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 4.9e-64 248.1 167 72.5
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 8.4e-64 247.3 166 72.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.9e-63 246.1 167 71.9
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.9e-63 246.1 167 73.1
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.4e-63 245.7 166 73.5
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.4e-63 245.7 163 74.2
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 71.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 73.5
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.6e-62 243.0 167 73.7
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.7e-62 242.3 164 72.0
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.5e-62 241.9 166 72.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.6e-62 241.5 166 74.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 6.0e-62 241.1 170 71.8
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 74.7
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.0e-61 238.8 167 71.3
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.0e-61 238.8 153 75.8
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 72.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 3.9e-61 238.4 166 71.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 3.9e-61 238.4 169 71.6
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 3.9e-61 238.4 140 84.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.7e-61 237.7 167 70.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 6.7e-61 237.7 193 64.8
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 8.7e-61 237.3 162 73.5
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.5e-60 235.7 166 71.1
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.6e-60 234.6 162 72.2
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 7.4e-60 234.2 167 69.5
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 9.6e-60 233.8 189 64.6
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.6e-60 233.8 169 71.0
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 69.9
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.6e-59 233.0 169 70.4
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 2.1e-59 232.6 166 71.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 4.8e-59 231.5 166 68.7
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 6.2e-59 231.1 166 69.3
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-58 230.3 191 62.8
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.4e-58 229.9 167 69.5
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 9.0e-58 227.3 166 68.7
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.2e-57 226.9 167 66.5
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 4.5e-57 224.9 159 72.3
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 4.9e-56 221.5 204 58.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 6.4e-56 221.1 137 79.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-55 220.3 127 85.8
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.8e-53 213.0 163 65.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.9e-53 211.8 164 64.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 6.7e-53 211.1 163 63.8
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 6.7e-53 211.1 166 59.6
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-52 210.3 190 57.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.3e-52 208.8 163 63.8
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.6e-51 206.5 168 60.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.6e-51 206.5 137 70.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-50 202.2 149 63.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 6.9e-50 201.1 149 63.1
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 9.0e-50 200.7 149 62.4
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 9.0e-50 200.7 149 62.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.2e-49 200.3 163 62.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.5e-49 199.9 136 71.3
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 4.5e-49 198.4 136 70.6
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.3e-48 196.8 149 62.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.3e-48 196.8 140 74.3
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-48 196.4 117 80.3
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.9e-48 195.7 134 69.4
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.9e-48 195.7 165 61.2
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.8e-48 195.3 164 59.8
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 6.5e-48 194.5 122 77.9
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 8.4e-48 194.1 174 60.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 8.4e-48 194.1 139 69.1
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.9e-47 193.0 149 59.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.9e-47 193.0 167 57.5
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.1e-47 191.0 167 56.9
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.2e-46 190.3 118 76.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.1e-46 189.5 117 79.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 6.0e-46 188.0 116 77.6
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.3e-45 186.0 164 54.9
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.9e-45 185.3 167 53.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 6.7e-45 184.5 136 61.8
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.7e-45 184.1 167 54.5
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 8.7e-45 184.1 127 65.4
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 117 73.5
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 121 74.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 5.7e-36 154.8 138 64.5
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.2e-35 152.9 132 60.6
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.2e-35 151.0 162 51.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.8e-34 149.8 103 68.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 4.1e-34 148.7 163 49.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-33 147.1 89 77.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.2e-32 142.9 175 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 5.0e-32 141.7 167 46.1
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.3e-29 132.9 146 47.3
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.1e-28 130.6 147 49.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.5e-28 130.2 92 66.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.5e-28 130.2 118 52.5
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.3e-28 129.0 134 53.7
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 6.3e-27 124.8 84 72.6
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 8.2e-27 124.4 76 76.3
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.8e-26 123.2 70 87.1
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.6e-22 109.0 95 57.9
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.6e-22 109.0 95 57.9
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.6e-22 109.0 95 57.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.3e-21 106.3 167 44.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.0e-21 105.9 71 66.2
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.2e-21 105.1 103 50.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.6e-20 102.8 148 40.5
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-19 99.8 99 52.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-17 94.0 57 70.2
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.0e-16 88.6 75 60.0
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.7e-14 82.8 59 64.4
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 4.7e-14 82.0 75 60.0
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.8e-13 80.1 54 75.9
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-12 76.3 63 63.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 6.3e-11 71.6 54 68.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.4e-10 70.5 57 54.4
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-09 66.6 50 68.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 2.7e-09 66.2 49 67.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.9e-09 65.1 48 66.7


User provided reference genes

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